Mining statistically-solid k-mers for accurate NGS error correction

BMC Genomics

Table 2 Error-correction performance comparison between ZEC, Lighter, Racer, BLESS2, Musket, BFC, SGA and MEC

Data	Corrector	Gain	Reca	Prec	Pber(%)
R1	ZEC	0.908	0.912	0.996	0.102
	Lighter	0.839	0.845	0.994	0.163
	Racer	0.760	0.822	0.929	0.190
	BLESS2	0.189	0.409	0.650	0.879
	Musket	0.499	0.628	0.830	0.448
	SGA	0.746	0.815	0.922	0.202
	BFC	0.753	0.817	0.927	0.196
	MEC	0.909	0.911	0.998	0.102
R2	ZEC	0.584	0.663	0.894	0.537
	Lighter	0.226	0.329	0.762	1.076
	Racer	0.364	0.450	0.839	0.780
	BLESS2	0.318	0.405	0.806	0.890
	Musket	0.265	0.364	0.786	0.984
	SGA	0.331	0.423	0.822	0.843
	BFC	0.306	0.400	0.811	0.893
	MEC	0.570	0.631	0.912	0.541
R3	ZEC	0.802	0.923	0.884	0.087
	Lighter	0.445	0.764	0.706	0.256
	Racer	0.562	0.814	0.764	0.196
	BLESS2	0.130	0.641	0.556	0.438
	Musket	0.533	0.802	0.749	0.211
	SGA	0.567	0.818	0.765	0.194
	BFC	0.603	0.833	0.783	0.176
	MEC	0.788	0.852	0.930	0.117
R4	ZEC	0.746	0.833	0.905	0.137
	Lighter	0.126	0.408	0.591	0.688
	Racer	0.313	0.541	0.703	0.484
	BLESS2	-0.517	0.018	0.003	0.862
	Musket	0.502	0.660	0.807	0.320
	SGA	0.542	0.690	0.823	0.289
	BFC	0.195	0.457	0.636	0.607
	MEC	0.705	0.806	0.889	0.201
S1	ZEC	0.918	0.935	0.982	0.056
	Lighter	0.791	0.851	0.934	0.130
	Racer	0.882	0.916	0.964	0.071
	BLESS2	0.634	0.740	0.875	0.243
	Musket	0.819	0.871	0.944	0.111
	SGA	0.810	0.865	0.940	0.117
	BFC	0.866	0.903	0.961	0.081
	MEC	0.899	0.916	0.982	0.063
S2	ZEC	0.853	0.894	0.956	0.109
	Lighter	0.058	0.329	0.548	0.891
	Racer	0.168	0.408	0.630	0.720
	BLESS2	0.311	0.509	0.719	0.543
	Musket	0.232	0.453	0.672	0.636
	SGA	0.075	0.342	0.562	0.862
	BFC	0.751	0.822	0.920	0.157
	MEC	0.849	0.887	0.959	0.122

ISSN: 1471-2164