TY - JOUR AU - Shi, H. AU - Zhang, G. AU - Zhou, M. AU - Cheng, L. AU - Yang, H. AU - Wang, J. PY - 2016 DA - 2016// TI - Integration of Multiple Genomic and Phenotype Data to Infer Novel miRNA-Disease Associations JO - Plos ONE VL - 11 UR - https://doi.org/10.1371/journal.pone.0148521 DO - 10.1371/journal.pone.0148521 ID - Shi2016 ER - TY - JOUR AU - Zou, Q. AU - Li, J. AU - Hong, Q. AU - Lin, Z. AU - Wu, Y. AU - Shi, H. PY - 2015 DA - 2015// TI - Prediction of MicroRNA-Disease Associations Based on Social Network Analysis Methods JO - Biomed Res Int VL - 2015 ID - Zou2015 ER - TY - JOUR AU - Yuan, D. AU - Cui, X. AU - Wang, Y. AU - Zhao, Y. AU - Li, H. AU - Hu, S. PY - 2015 DA - 2015// TI - Enrichment Analysis Identifies Functional MicroRNA-Disease Associations in Humans JO - Plos ONE VL - 10 UR - https://doi.org/10.1371/journal.pone.0136285 DO - 10.1371/journal.pone.0136285 ID - Yuan2015 ER - TY - JOUR AU - Zou, Q. AU - Li, J. AU - Song, L. AU - Zeng, X. AU - Wang, G. PY - 2016 DA - 2016// TI - Similarity computation strategies in the microRNA-disease network: a survey JO - Brief Funct Genom VL - 15 ID - Zou2016 ER - TY - JOUR AU - Zeng, X. AU - Liu, L. AU - Lu, L. PY - 2018 DA - 2018// TI - Prediction of potential disease-associated microRNAs using structural perturbation method JO - Bioinformatics VL - 34 UR - https://doi.org/10.1093/bioinformatics/bty112 DO - 10.1093/bioinformatics/bty112 ID - Zeng2018 ER - TY - JOUR AU - Zeng, X. AU - Zhang, X. AU - Zou, Q. PY - 2016 DA - 2016// TI - Integrative approaches for predicting microRNA function and prioritizing disease-related microRNA using biological interaction networks JO - Brief Bioinform VL - 17 UR - https://doi.org/10.1093/bib/bbv033 DO - 10.1093/bib/bbv033 ID - Zeng2016 ER - TY - JOUR AU - Mørk, S. AU - Pletscher-Frankild, S. AU - Palleja, C. A. AU - Gorodkin, J. AU - Jensen, L. J. PY - 2014 DA - 2014// TI - Protein-driven inference of miRNA-disease associations JO - Bioinformatics VL - 30 UR - https://doi.org/10.1093/bioinformatics/btt677 DO - 10.1093/bioinformatics/btt677 ID - Mørk2014 ER - TY - JOUR AU - Li, Y. AU - Qiu, C. AU - Tu, J. AU - Geng, B. AU - Yang, J. AU - Jiang, T. PY - 2014 DA - 2014// TI - HMDD v2.0: a database for experimentally supported human microRNA and disease associations JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1023 DO - 10.1093/nar/gkt1023 ID - Li2014 ER - TY - JOUR AU - Jiang, Q. AU - Wang, Y. AU - Hao, Y. AU - Juan, L. AU - Teng, M. AU - Zhang, X. PY - 2009 DA - 2009// TI - miR2Disease: a manually curated database for microRNA deregulation in human disease JO - Nucleic Acids Res VL - 37 ID - Jiang2009 ER - TY - JOUR AU - Peng, L. AU - Peng, M. AU - Liao, B. AU - Huang, G. AU - Liang, W. AU - Li, K. PY - 2017 DA - 2017// TI - Improved low-rank matrix recovery method for predicting miRNA-disease association JO - Sci Rep VL - 7 UR - https://doi.org/10.1038/s41598-017-06201-3 DO - 10.1038/s41598-017-06201-3 ID - Peng2017 ER - TY - JOUR AU - Luo, J. AU - Ding, P. AU - Liang, C. AU - Chen, X. PY - 2018 DA - 2018// TI - Semi-supervised prediction of human miRNA-disease association based on graph regularization framework in heterogeneous networks JO - Neurocomputing VL - 294 UR - https://doi.org/10.1016/j.neucom.2018.03.003 DO - 10.1016/j.neucom.2018.03.003 ID - Luo2018 ER - TY - JOUR AU - Zhao, Q. AU - Xie, D. AU - Liu, H. AU - Wang, F. AU - Yan, G. Y. AU - Chen, X. PY - 2018 DA - 2018// TI - SSCMDA: spy and super cluster strategy for MiRNA-disease association prediction JO - Oncotarget VL - 9 ID - Zhao2018 ER - TY - JOUR AU - Liu, Y. AU - Zeng, X. AU - He, Z. AU - Quan, Z. PY - 2016 DA - 2016// TI - Inferring microRNA-disease associations by random walk on a heterogeneous network with multiple data sources JO - IEEE/ACM Trans Comput Biol Bioinform VL - PP ID - Liu2016 ER - TY - JOUR AU - Shi, H. AU - Xu, J. AU - Zhang, G. AU - Xu, L. AU - Li, C. AU - Wang, L. PY - 2013 DA - 2013// TI - Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes JO - BMC Syst Biol VL - 7 UR - https://doi.org/10.1186/1752-0509-7-101 DO - 10.1186/1752-0509-7-101 ID - Shi2013 ER - TY - JOUR AU - Luo, J. AU - Xiao, Q. PY - 2017 DA - 2017// TI - A novel approach for predicting microRNA-disease associations by unbalanced bi-random walk on heterogeneous network JO - J Biomed Inform VL - 66 UR - https://doi.org/10.1016/j.jbi.2017.01.008 DO - 10.1016/j.jbi.2017.01.008 ID - Luo2017 ER - TY - JOUR AU - Lan, W. AU - Wang, J. AU - Li, M. AU - Liu, J. AU - Wu, F. X. AU - Pan, Y. PY - 2016 DA - 2016// TI - Predicting microRNA-disease associations based on improved microRNA and disease similarities JO - IEEE/ACM Trans Comput Biol Bioinform VL - PP ID - Lan2016 ER - TY - JOUR AU - Xuan, P. AU - Han, K. AU - Guo, M. AU - Guo, Y. AU - Li, J. AU - Ding, J. PY - 2013 DA - 2013// TI - Correction: Prediction of microRNAs Associated with Human Diseases Based on Weighted k Most Similar Neighbors JO - Plos ONE VL - 8 UR - https://doi.org/10.1371/journal.pone.0070204 DO - 10.1371/journal.pone.0070204 ID - Xuan2013 ER - TY - JOUR AU - Jiang, Q. AU - Hao, Y. AU - Wang, G. AU - Juan, L. AU - Zhang, T. AU - Teng, M. PY - 2010 DA - 2010// TI - Prioritization of disease microRNAs through a human phenome-microRNAome network JO - BMC Syst Biol VL - 4 UR - https://doi.org/10.1186/1752-0509-4-S1-S2 DO - 10.1186/1752-0509-4-S1-S2 ID - Jiang2010 ER - TY - JOUR AU - Pasquier, C. AU - Gardès, J. PY - 2016 DA - 2016// TI - Prediction of miRNA-disease associations with a vector space model JO - Sci Rep VL - 6 UR - https://doi.org/10.1038/srep27036 DO - 10.1038/srep27036 ID - Pasquier2016 ER - TY - JOUR AU - Yu, Q. AU - Zhang, H. AU - Cheng, L. AU - Xiao, D. PY - 2017 DA - 2017// TI - KATZMDA: Prediction of miRNA-disease associations based on KATZ model JO - IEEE Access VL - PP UR - https://doi.org/10.1109/ACCESS.2017.2674687 DO - 10.1109/ACCESS.2017.2674687 ID - Yu2017 ER - TY - JOUR AU - Nalluri, J. J. AU - Kamapantula, B. K. AU - Barh, D. AU - Jain, N. AU - Bhattacharya, A. AU - Almeida, S. S. D. PY - 2015 DA - 2015// TI - DISMIRA: Prioritization of disease candidates in miRNA-disease associations based on maximum weighted matching inference model and motif-based analysis JO - BMC Genom VL - 16 Suppl 5 UR - https://doi.org/10.1186/1471-2164-16-S5-S12 DO - 10.1186/1471-2164-16-S5-S12 ID - Nalluri2015 ER - TY - JOUR AU - Liao, B. AU - Ding, S. AU - Chen, H. AU - Li, Z. AU - Cai, L. PY - 2015 DA - 2015// TI - Identifying human microRNA–disease associations by a new diffusion-based method JO - J Bioinform Comput Biol VL - 13 UR - https://doi.org/10.1142/S0219720015500146 DO - 10.1142/S0219720015500146 ID - Liao2015 ER - TY - JOUR AU - Zeng, X. AU - Liao, Y. AU - Liu, Y. AU - Zou, Q. PY - 2016 DA - 2016// TI - Prediction and Validation of Disease Genes Using HeteSim Scores JO - IEEE/ACM Trans Comput Biol Bioinform VL - 99 ID - Zeng2016 ER - TY - JOUR AU - Chen, X. AU - Liu, M. X. AU - Yan, G. Y. PY - 2012 DA - 2012// TI - RWRMDA: predicting novel human microRNA–disease associations JO - Mol BioSyst VL - 8 UR - https://doi.org/10.1039/c2mb25180a DO - 10.1039/c2mb25180a ID - Chen2012 ER - TY - JOUR AU - Chen, X. AU - Yan, C. C. AU - Zhang, X. AU - You, Z. H. AU - Deng, L. AU - Liu, Y. PY - 2016 DA - 2016// TI - WBSMDA: Within and Between Score for MiRNA-Disease Association prediction JO - Sci Rep VL - 6 UR - https://doi.org/10.1038/srep21106 DO - 10.1038/srep21106 ID - Chen2016 ER - TY - JOUR AU - Gu, C. AU - Bo, L. AU - Li, X. AU - Li, K. PY - 2016 DA - 2016// TI - Network Consistency Projection for Human miRNA-Disease Associations Inference JO - Sci Rep VL - 6 UR - https://doi.org/10.1038/srep36054 DO - 10.1038/srep36054 ID - Gu2016 ER - TY - JOUR AU - Chen, X. AU - Yan, G. Y. PY - 2014 DA - 2014// TI - Semi-supervised learning for potential human microRNA-disease associations inference JO - Sci Rep VL - 4 UR - https://doi.org/10.1038/srep05501 DO - 10.1038/srep05501 ID - Chen2014 ER - TY - JOUR AU - Chen, X. AU - Huang, L. PY - 2017 DA - 2017// TI - LRSSLMDA: Laplacian Regularized Sparse Subspace Learning for MiRNA-Disease Association prediction JO - Plos Comput Biol VL - 13 UR - https://doi.org/10.1371/journal.pcbi.1005912 DO - 10.1371/journal.pcbi.1005912 ID - Chen2017 ER - TY - JOUR AU - Fu, L. AU - Peng, Q. PY - 2017 DA - 2017// TI - A deep ensemble model to predict miRNA-disease association JO - Sci Rep VL - 7 UR - https://doi.org/10.1038/s41598-017-15235-6 DO - 10.1038/s41598-017-15235-6 ID - Fu2017 ER - TY - JOUR AU - Jiang, Q. AU - Wang, G. AU - Zhang, T. AU - Wang, Y. PY - 2011 DA - 2011// TI - Predicting human microRNA-disease associations based on support vector machine JO - Int J Data Min Bioinform VL - 8 UR - https://doi.org/10.1504/IJDMB.2013.056078 DO - 10.1504/IJDMB.2013.056078 ID - Jiang2011 ER - TY - JOUR AU - Li, J. Q. AU - Rong, Z. H. AU - Chen, X. AU - Yan, G. Y. AU - You, Z. H. PY - 2017 DA - 2017// TI - MCMDA: Matrix completion for MiRNA-disease association prediction JO - Oncotarget VL - 8 ID - Li2017 ER - TY - STD TI - Lan W, Wang J, Li M, Liu J, Pan Y. Predicting microRNA-disease associations by integrating multiple biological information. In: IEEE International Conference on Bioinformatics and Biomedicine. Bioinformatics and Biomedicine: 2015. p. 183–8. ID - ref32 ER - TY - JOUR AU - Zeng, X. AU - Ding, N. AU - Rodríguez-Patón, A. AU - Quan, Z. PY - 2017 DA - 2017// TI - Probability-based collaborative filtering model for predicting gene–disease associations JO - BMC Med Genomics VL - 10 UR - https://doi.org/10.1186/s12920-017-0313-y DO - 10.1186/s12920-017-0313-y ID - Zeng2017 ER - TY - JOUR AU - Chen, X. AU - Guan, N. N. AU - Li, J. Q. AU - Yan, G. Y. PY - 2018 DA - 2018// TI - GIMDA: Graphlet interaction-based MiRNA-disease association prediction JO - J Cel Mol Med VL - 22 UR - https://doi.org/10.1111/jcmm.13429 DO - 10.1111/jcmm.13429 ID - Chen2018 ER - TY - JOUR AU - Shen, Z. AU - Zhang, Y. H. AU - Han, K. AU - Nandi, A. K. AU - Honig, B. AU - Huang, D. S. PY - 2017 DA - 2017// TI - miRNA-Disease Association Prediction with Collaborative Matrix Factorization JO - Complexity VL - 2017 UR - https://doi.org/10.1155/2017/2498957 DO - 10.1155/2017/2498957 ID - Shen2017 ER - TY - JOUR AU - You, Z. H. AU - Huang, Z. A. AU - Zhu, Z. AU - Yan, G. Y. AU - Li, Z. W. AU - Wen, Z. PY - 2017 DA - 2017// TI - PBMDA: A novel and effective path-based computational model for miRNA-disease association prediction JO - Plos Comput Biol VL - 13 UR - https://doi.org/10.1371/journal.pcbi.1005455 DO - 10.1371/journal.pcbi.1005455 ID - You2017 ER - TY - JOUR AU - You, Z. H. AU - Wang, L. P. AU - Chen, X. AU - Zhang, S. AU - Li, X. F. AU - Yan, G. Y. PY - 2017 DA - 2017// TI - PRMDA: personalized recommendation-based MiRNA-disease association prediction JO - Oncotarget VL - 8 UR - https://doi.org/10.18632/oncotarget.20996 DO - 10.18632/oncotarget.20996 ID - You2017 ER - TY - JOUR AU - Peng, L. AU - Chen, Y. AU - Ma, N. AU - Chen, X. PY - 2017 DA - 2017// TI - NARRMDA: negative-aware and rating-based recommendation algorithm for miRNA-disease association prediction JO - Mol BioSyst VL - 13 UR - https://doi.org/10.1039/C7MB00499K DO - 10.1039/C7MB00499K ID - Peng2017 ER - TY - JOUR AU - Chen, X. AU - Niu, Y. W. AU - Wang, G. H. AU - Yan, G. Y. PY - 2017 DA - 2017// TI - MKRMDA: multiple kernel learning-based Kronecker regularized least squares for MiRNA–disease association prediction JO - J Transl Med VL - 15 UR - https://doi.org/10.1186/s12967-017-1340-3 DO - 10.1186/s12967-017-1340-3 ID - Chen2017 ER - TY - JOUR AU - Wang, D. AU - Wang, J. AU - Lu, M. AU - Song, F. AU - Cui, Q. PY - 2010 DA - 2010// TI - Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq241 DO - 10.1093/bioinformatics/btq241 ID - Wang2010 ER - TY - JOUR AU - Kozomara, A. AU - Griffithsjones, S. PY - 2014 DA - 2014// TI - miRBase: annotating high confidence microRNAs using deep sequencing data JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1181 DO - 10.1093/nar/gkt1181 ID - Kozomara2014 ER - TY - JOUR AU - Chen, X. AU - Niu, Y. W. AU - Wang, G. H. AU - Yan, G. Y. PY - 2017 DA - 2017// TI - HAMDA: Hybrid Approach for MiRNA-Disease Association prediction JO - J Biomed Inform VL - 76 UR - https://doi.org/10.1016/j.jbi.2017.10.014 DO - 10.1016/j.jbi.2017.10.014 ID - Chen2017 ER - TY - JOUR AU - Lowe, H. J. AU - Barnett, G. O. PY - 1994 DA - 1994// TI - Understanding and using the medical subject headings (MeSH) vocabulary to perform literature searches JO - Jama VL - 271 UR - https://doi.org/10.1001/jama.1994.03510380059038 DO - 10.1001/jama.1994.03510380059038 ID - Lowe1994 ER - TY - JOUR AU - Luo, J. AU - Xiao, Q. AU - Liang, C. AU - Ding, P. PY - 2017 DA - 2017// TI - Predicting MicroRNA-Disease Associations Using Kronecker Regularized Least Squares Based on Heterogeneous Omics Data JO - IEEE Access VL - 5 UR - https://doi.org/10.1109/ACCESS.2017.2672600 DO - 10.1109/ACCESS.2017.2672600 ID - Luo2017 ER - TY - JOUR AU - Lee, I. AU - Blom, U. M. AU - Wang, P. I. AU - Shim, J. E. AU - Marcotte, E. M. PY - 2011 DA - 2011// TI - Prioritizing candidate disease genes by network-based boosting of genome-wide association data JO - Genome Res VL - 21 UR - https://doi.org/10.1101/gr.118992.110 DO - 10.1101/gr.118992.110 ID - Lee2011 ER - TY - JOUR AU - Liang, C. AU - Wang, G. AU - Li, J. AU - Zhang, T. AU - Xu, P. AU - Wang, Y. PY - 2013 DA - 2013// TI - SIDD: A Semantically Integrated Database towards a Global View of Human Disease JO - Plos ONE VL - 8 UR - https://doi.org/10.1371/journal.pone.0075504 DO - 10.1371/journal.pone.0075504 ID - Liang2013 ER - TY - STD TI - He J, Chang SF, Xie L. Fast kernel learning for spatial pyramid matching: Computer Vision and Pattern Recognition; 2008, pp. 1–7. ID - ref47 ER - TY - STD TI - Xia Z, Zhou X, Sun Y, Wu LY. Semi-supervised Drug-Protein Interaction Prediction from Heterogeneous Spaces, Vol. 4; 2010. p. S6. ID - ref48 ER - TY - JOUR AU - Nascimento, A. C. A. AU - Prudencio, R. B. C. AU - Costa, I. G. PY - 2016 DA - 2016// TI - A multiple kernel learning algorithm for drug-target interaction prediction JO - BMC Bioinformatics VL - 17 UR - https://doi.org/10.1186/s12859-016-0890-3 DO - 10.1186/s12859-016-0890-3 ID - Nascimento2016 ER - TY - JOUR AU - Gonen, M. AU - Kaski, S. PY - 2014 DA - 2014// TI - Kernelized Bayesian Matrix Factorization JO - IEEE Trans Pattern Anal Mach Intell VL - 36 UR - https://doi.org/10.1109/TPAMI.2014.2313125 DO - 10.1109/TPAMI.2014.2313125 ID - Gonen2014 ER - TY - JOUR AU - Wang, L. AU - Li, X. AU - Zhang, L. AU - Gao, Q. PY - 2017 DA - 2017// TI - Improved anticancer drug response prediction in cell lines using matrix factorization with similarity regularization JO - BMC Cancer VL - 17 UR - https://doi.org/10.1186/s12885-017-3500-5 DO - 10.1186/s12885-017-3500-5 ID - Wang2017 ER - TY - STD TI - Zheng X, Ding H, Mamitsuka H, Zhu S. Collaborative matrix factorization with multiple similarities for predicting drug-target interactions. In: ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. Proceedings of the 19th ACM SIGKDD international conference on Knowledge discovery and data mining: 2013. p. 1025–33. ID - ref52 ER - TY - JOUR AU - Liu, Y. AU - Wu, M. AU - Miao, C. AU - Zhao, P. AU - Li, X. PY - 2016 DA - 2016// TI - Neighborhood Regularized Logistic Matrix Factorization for Drug-Target Interaction Prediction JO - PLoS Comput Biol VL - 12 UR - https://doi.org/10.1371/journal.pcbi.1004760 DO - 10.1371/journal.pcbi.1004760 ID - Liu2016 ER - TY - JOUR AU - Ezzat, A. AU - Zhao, P. AU - Wu, M. AU - Li, X. AU - Kwoh, C. K. PY - 2017 DA - 2017// TI - Drug-Target Interaction Prediction with Graph Regularized Matrix Factorization JO - IEEE/ACM Trans Comput Biol Bioinform VL - 14 UR - https://doi.org/10.1109/TCBB.2016.2530062 DO - 10.1109/TCBB.2016.2530062 ID - Ezzat2017 ER - TY - JOUR AU - Chen, X. AU - Yan, C. C. AU - Zhang, X. AU - You, Z. H. AU - Huang, Y. A. AU - Yan, G. Y. PY - 2016 DA - 2016// TI - HGIMDA: Heterogeneous graph inference for miRNA-disease association prediction JO - Oncotarget VL - 7 ID - Chen2016 ER - TY - JOUR AU - Yang, Z. AU - Ren, F. AU - Liu, C. AU - He, S. AU - Sun, G. AU - Gao, Q. PY - 2010 DA - 2010// TI - dbDEMC: a database of differentially expressed miRNAs in human cancers JO - BMC Genomics VL - 11 UR - https://doi.org/10.1186/1471-2164-11-S3-I1 DO - 10.1186/1471-2164-11-S3-I1 ID - Yang2010 ER -