Revealing transcription factor and histone modification co-localization and dynamics across cell lines by integrating ChIP-seq and RNA-seq data

Table 5 The prediction accuracies of gene expression level for 66 factors in two cell lines (Acc values)

TF/HM	GM12878(%)	K562(%)	TF/HM	GM12878(%)	K562(%)	TF/HM	GM12878(%)	K562(%)
H3k9ac	89.18	90.75	PU.1	71.52	70.87	STAT5	60.15	60.21
ELF1	88.05	86.77	TBLR1	70.45	63.27	RAD21	59.98	58.56
TAF1	87.67	90.18	GABPA	70.01	77.88	H3k27me3	59.61	62.45
POL2	86.65	91.77	NRF1	69.46	65.09	NRSF	59.00	63.88
H3k27ac	85.96	91.69	NFYB	69.07	63.04	H4k20me1	58.16	62.35
MXIL	85.31	68.23	SRF	68.08	61.18	CREB1	57.97	64.88
YY1	84.03	82.17	CHD1	68.02	76.89	SMC3	57.91	55.25
MAZ	83.99	87.94	ELK1	66.72	59.98	CFOS	57.43	61.66
PML	83.21	81.25	USF1	66.62	69.46	CEBPB	56.82	68.67
EGR1	82.21	84.14	USF2	66.43	56.13	H3k9me3	56.32	60.93
H2az	82.17	81.88	ZNF143	65.97	68.48	ZBTB33	56.09	57.30
CHD2	79.97	70.11	H3k36me3	65.22	72.23	NFYA	55.90	60.00
TBP	79.89	88.89	MEF2A	64.92	56.43	STAT1	54.96	52.43
SP1	79.80	68.31	P300	64.80	72.58	ATF3	54.58	72.60
ZNF384	79.70	87.00	SIX5	64.78	62.24	Corest	53.35	57.81
MAX	79.57	88.32	CMYC	64.02	76.87	EZH2	52.80	51.26
H3k4me2	77.86	86.29	ETS1	62.93	78.42	NFE2	52.20	52.64
H3k4me3	77.15	88.09	BCLAF1	62.91	61.74	TR4	52.09	52.16
CDP	76.52	83.09	E2F4	62.20	78.21	JUND	51.84	79.78
H3k79me2	75.45	78.82	BCL3	61.55	52.49	MAFK	50.86	59.21
H3k4me1	73.04	82.71	CTCF	61.47	60.36	POL3	50.19	50.15
BHLHE40	71.95	77.21	RFX5	61.09	54.12	ZNF274	50.04	50.06

ISSN: 1471-2164