Comparative transcriptome and translatome analysis in contrasting rice genotypes reveals differential mRNA translation in salt-tolerant Pokkali under salt stress

Table 1 Summary of RNA-Seq and Polysomal RNA-seq reads sequenced from control and salt-stressed Pok and IR29

	IR29c_RNA	IR29s_RNA	POKc_RNA	POKs_RNA	IR29c_PS	IR29s_PS	POKc_PS	POKs_PS
Raw reads	96,100,081	85,472,491	101,585,264	67,036,814	170,629,357	157,045,640	148,401,455	110,795,578
Filtered reads	78,181,515	70,361,944	83,082,414	58,994,184	121,305,093	119,567,766	116,502,326	83,609,586
cDNA	64,774,078	56,675,885	69,259,043	46,680,420	104,283,746	80,032,608	54,405,711	47,522,099
Exons	58,116,153	50,855,521	63,980,331	43,862,264	94,258,549	71,885,574	49,107,464	43,386,281
Junctions	6,657,925	5,820,364	5,278,712	2,818,156	10,025,197	8,147,034	5,298,247	4,135,818
Introns	3,444,625	2,926,711	6,002,251	3,081,373	4,601,871	4,001,816	2,295,597	1,813,751
Intergenic regions	30,074,168	25,475,468	43,686,405	31,329,140	55,664,740	38,593,396	27,603,916	24,192,773

IR29c RNA and IR29s denotes the RNA-Seq libraries of IR29 under control and salt stress conditions, respectively. The columns ending with PS denotes the polysomal RNA-Seq libraries (translatome)

ISSN: 1471-2164