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Table 1 Summary of RNA-Seq and Polysomal RNA-seq reads sequenced from control and salt-stressed Pok and IR29

From: Comparative transcriptome and translatome analysis in contrasting rice genotypes reveals differential mRNA translation in salt-tolerant Pokkali under salt stress

  IR29c_RNA IR29s_RNA POKc_RNA POKs_RNA IR29c_PS IR29s_PS POKc_PS POKs_PS
Raw reads 96,100,081 85,472,491 101,585,264 67,036,814 170,629,357 157,045,640 148,401,455 110,795,578
Filtered reads 78,181,515 70,361,944 83,082,414 58,994,184 121,305,093 119,567,766 116,502,326 83,609,586
cDNA 64,774,078 56,675,885 69,259,043 46,680,420 104,283,746 80,032,608 54,405,711 47,522,099
Exons 58,116,153 50,855,521 63,980,331 43,862,264 94,258,549 71,885,574 49,107,464 43,386,281
Junctions 6,657,925 5,820,364 5,278,712 2,818,156 10,025,197 8,147,034 5,298,247 4,135,818
Introns 3,444,625 2,926,711 6,002,251 3,081,373 4,601,871 4,001,816 2,295,597 1,813,751
Intergenic regions 30,074,168 25,475,468 43,686,405 31,329,140 55,664,740 38,593,396 27,603,916 24,192,773
  1. IR29c RNA and IR29s denotes the RNA-Seq libraries of IR29 under control and salt stress conditions, respectively. The columns ending with PS denotes the polysomal RNA-Seq libraries (translatome)