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Table 2 Identified miRNA families and their frequencies (reads per ten million [RPTM]) in whole plants, roots and shoots of three alfalfa genotypes (miRNA-stars were marked in bold)

From: Genotype- and tissue-specific miRNA profiles and their targets in three alfalfa (Medicago sativa L) genotypes

 

Whole plants

Roots

Shoots

Altet-4

NECS-141

NF08ALF06

Altet-4

NECS-141

NF08ALF06

Altet-4

NECS-141

miR156-5p

4712

7243

6436

1001

3466

3145

19,808

47,306

miR156-3p

3262

4012

2992

545

755

548

4634

6420

miR159-3p

6315

11,050

8484

3910

23,465

10,549

61,929

103,370

miR160-5p

225

417

351

20

277

113

3505

8706

miR162-3p

140

229

292

194

454

361

533

517

miR164-5p

108

275

306

6

77

57

48

431

miR166-3p

336,905

552,267

534,054

34,634

111,596

134,679

101,118

131,196

miR166-5p

544

960

614

228

508

438

800

1216

miR167-5p

218

470

722

107

240

357

699

1389

miR167-3p

2

1

0

0

0

0

0

0

miR168-5p

1121

1980

1691

735

2960

1317

3460

5049

miR168-3p

672

691

768

182

443

194

5550

5638

miR169-5p

19

34

35

47

55

35

46

59

miR169-3p

7

12

5

6

18

7

2

2

miR171-3p

51

120

232

44

238

316

60

85

miR171e-5p

26

39

44

22

37

42

7

6

miR172-3p

62

138

240

0

1

1

2

3

miR172-5p

3

8

20

1

1

2

2

2

miR319-3p

1631

3689

2101

1607

6281

3323

4330

10,864

miR319-5p

46

72

74

3

20

14

129

559

miR390-5p

95

410

318

86

656

234

121

382

miR393-5p

11

24

34

4

8

10

22

45

miR395-3p

3

8

7

12

13

7

2

0

miR396-5p

12,185

21,926

22,411

2835

14,549

8121

39,236

58,336

miR396-3p

250

437

437

76

312

188

323

356

miR397-5p

57

28

15

37

16

11

94

61

miR398a-5p

19

16

25

0

2

1

4

3

miR398-3p

3814

3223

2272

2101

4086

3176

35,538

26,478

miR399-3p

17

11

11

25

26

13

62

43

miR408-3p

2656

1301

1096

977

737

570

6380

2866

miR408-5p

17

7

12

12

14

8

55

35

miR482-3p

28

27

49

18

19

45

41

105

miR482-5p

7

10

10

11

19

13

9

12

miR530-5p

2

7

8

0

1

1

2

4

miR1507–3

963

1789

1701

881

1596

1230

1778

3349

miR1510-5p

1959

4278

3520

523

3505

1429

12,496

34,705

miR1510-3p

96

151

167

52

118

63

256

617

miR2111

47

20

10

44

15

42

278

22

miR2118

5607

11,948

16,134

106

610

307

79,977

165,310

miR2199

95

15

42

21

18

30

156

13

miR2585

57

7

74

28

1

22

239

10

miR2587

0

6

9

0

10

10

13

28

miR2590

15

41

42

23

55

25

109

177

miR2592

393

1350

395

119

1612

268

1224

1742

miR2601-5p

0

0

0

0

0

0

1

1

miR2603-5p

0

8

1

1

1

1

5

24

miR2629-5p

2

5

4

1

3

7

2

5

miR2632-5p

0

1

0

0

0

0

1

18

miR2634-3p

5

3

7

6

4

15

9

6

miR2643-3p

1502

2689

2106

382

1462

948

9682

24,971

miR2651-3p

27

52

22

4

21

7

40

49

miR2661-5p

3

4

5

2

4

5

13

9

miR2666-3p

0

21

0

0

14

0

0

29

miR2674-3p

0

0

1

0

0

0

0

0

miR2678-3p

2

6

4

0

4

4

4

12

miR4414-3p

2

4

4

0

1

1

3

7

miR4414-5p

1

3

4

1

1

0

5

7

miR5037-5p

4

3

13

3

8

24

2

4

miR5204-3p

4

10

6

3

28

17

6

10

miR5205-5p

7

22

14

0

6

6

15

6

miR5207-5p

0

0

0

0

0

1

0

1

miR5208-3p

2

1

1

0

0

0

1

1

miR5208d-5p

0

0

1

0

1

0

1

1

miR5211-5p

432

85

23

559

71

41

292

59

miR5213-5p

801

836

887

181

891

829

1397

1379

miR5214-3p

63

155

153

97

414

452

153

201

miR5225-5p

4

2

8

3

1

8

1

1

miR5230-5p

1

2

1

0

1

0

6

1

miR5231-5p

10

7

7

3

11

1

43

69

miR5232-5p

67

253

419

56

503

417

602

3964

miR5237-3p

2

2

0

0

2

1

6

4

miR5238-5p

2

0

2

1

2

1

0

0

miR5239-5p

347

269

430

16

52

72

622

773

miR5241-3p

0

0

0

0

0

0

0

1

miR5243-3p

0

0

0

0

0

0

0

1

miR5244-3p

0

1

1

0

0

0

0

1

miR5248-5p

0

2

1

0

2

1

0

3

miR5255-3p

0

1

1

0

0

0

0

1

miR5257-5p

1

0

0

0

0

0

0

0

miR5261-3p

76

89

93

22

302

127

283

227

miR5266-5p

0

0

0

4

2

3

0

1

miR5267-5p

1

3

1

0

1

1

0

2

miR5269-3p

0

1

1

1

0

0

0

0

miR5271-5p

1

1

1

1

2

2

1

1

miR5272-5p

17

22

12

12

34

21

18

18

miR5273-3p

1

3

1

1

3

1

4

2

miR5277-3p

60

108

62

75

99

48

16

20

miR5279-5p

3

19

13

1

16

8

8

7

miR5281-3p

29

47

29

35

69

18

141

150

miR5282-3p

0

0

0

0

0

0

1

0

miR5284-3p

20

52

50

4

14

17

10

23

miR5285-5p

0

0

1

1

1

0

2

3

miR5286-3p

2

0

2

1

3

2

3

2

miR5287-3p

6

10

14

8

9

4

17

19

miR5289-3p

0

1

0

1

0

0

0

0

miR5290-3p

0

5

1

1

2

1

2

6

miR5291-3p

0

1

1

0

3

1

0

1

miR5292-3p

16

35

21

6

34

21

53

82

miR5294-3p

0

0

1

0

0

0

0

0

miR5295-3p

9

29

13

3

15

9

7

6

miR5296-3p

1

0

0

0

0

0

0

0

miR5297-3p

0

1

2

1

0

1

1

1

miR5298-3p

4

4

1

4

0

1

3

15

miR5299-3p

0

1

0

0

1

1

0

0

miR5558-5p

539

1938

1820

220

415

412

1103

1276

miR5559-5p

7

3

0

0

0

0

8

5

miR5561-3p

5

14

18

0

5

5

4

5

miR5561-5p

0

0

0

1

0

0

0

0

miR5743-5p

19

113

6

0

1

1

70

398

miR5744-5p

0

0

0

0

0

1

0

0

miR5745-3p

28

39

41

69

144

171

126

113

miR5752-3p

0

4

0

0

1

0

8

11

miR5754-5p

0

6

19

0

1

3

2

41

miR7696-5p

0

1

1

0

1

0

0

1

miR7696-3p

174

95

253

40

138

184

1173

255

miR7701-3p

0

1

0

0

0

0

0

0