Table 3 Identified novel miRNAs based on sequencing both 5′ and 3′ reads and the most abundant ones that is marked in bold denotes potential novel miRNA based on their greater abundances
miR-5p | miR-5p_seq | miR-3p | miR-3p_seq | Altet-4 Plants | NECS-141 Plants | NF08ALF06 Plants | Altet-4 Roots | NECS-141 Roots | NF08ALF06 Roots | Altet-4 Shoots | NECS-141 Shoots |
|---|---|---|---|---|---|---|---|---|---|---|---|
t61680599 | UUUCUUUGACUGGUUUUUGAAU | t21108041 | CAAAAGCCUGUCAAUGAAAAUG | 0 | 31 | 0 | 0 | 312 | 0 | 0 | 32 |
t46402976 | UAGCAUCAAGCGUCGCGUCGAU | t28372577 | CGACCCGAGGCUUAUGCGAUC | 115 | 97 | 145 | 81 | 479 | 229 | 335 | 315 |
t59820880 | UUGGCAGAAUCACGGUGUGCC | t29809748 | CGGUGGCAUCGUGAUUUUGAC | 0 | 6 | 25 | 1 | 6 | 8 | 1 | 47 |
t21870702 | CAACUCGGUCCUUCUGUUAAC | t44359413 | UAACAGAAGGACUGAGUUGCC | 0 | 11 | 3 | 1 | 41 | 12 | 24 | 103 |
t62603216 | UUUUCAAGUUGGUCCCUUACG | t44814359 | UAAGGGACCAACUUGAAAACU | 77 | 178 | 196 | 7 | 240 | 107 | 529 | 899 |
t8901469 | ACCUGGAGACAGAGAUGCAAU | t45832108 | UACGUCUCUGUCUUUCGGGUUG | 1 | 55 | 28 | 2 | 222 | 28 | 6 | 247 |
t12927907 | AGGAUAACAAUGUUGCAUAAG | t47767430 | UAUGUAGCACUGUUUUUCUGA | 13 | 43 | 85 | 14 | 273 | 147 | 83 | 262 |
t63076572 | UUUUUAGAUACAUUGAAUAAU | t47960370 | UAUUCAAUGUAUCUAAAAAG | 10 | 10 | 14 | 4 | 40 | 2 | 208 | 177 |
t53501433 | UGAUUAUUCUACUACCCGGACC | t50063038 | UCCGGGUAGCAGAAUAAUCAUC | 350 | 371 | 78 | 45 | 371 | 18 | 17,057 | 20,494 |
t12458129 | AGCGGUUGGUACAAUGCAAUAu | t50582913 | UCGCCUUGUACCAACCUACUGC | 544 | 915 | 0 | 123 | 1148 | 0 | 881 | 1453 |
t40560414 | GGUCCUGAUGUUUUUUAGAGC | t51235783 | UCUCAAAGACAUAAGGAACCUC | 19 | 281 | 0 | 24 | 762 | 0 | 269 | 1655 |
t55270980 | UGUCUUUAGCUUCCGAAACAa | t55621674 | UGUUCCGGUAGAUGAAGUCAC | 4 | 4 | 0 | 2 | 23 | 0 | 24 | 40 |
t14211567 | AGUUAAUUGUGUUGCAUGAGUU | t57726911 | UUCAGCAACAUGAGUUAACUCA | 17 | 26 | 60 | 3 | 48 | 22 | 42 | 50 |
t8194733 | ACAUUUUAGAUUGUUGAGGAA | t27568341 | CCUCAAUUAUCUAUUAUGUUU | 0 | 0 | 3 | 0 | 3 | 6 | 6 | 0 |
t62313817 | UUUGUUAAACAUUUGUUUCC | t311560 | AAAACAAAUGUUUAGCUAAG | 0 | 6 | 0 | 0 | 15 | 1 | 0 | 12 |
t55268921 | UGUCUUGGUUUCAAAAAGAAGu | t52170136 | UCUUUUUGCAAACCAACUCAAU | 4 | 19 | 13 | 1 | 29 | 4 | 9 | 56 |
t51870988 | UCUUAUUUUCGACAUUGCAAAG | t59475847 | UUGCAGGUCGAGAAUAAAAUG | 19 | 99 | 71 | 1 | 9 | 1 | 353 | 1072 |