Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

Table 5 siRNA DC-clusters differentially expressed in galls at 7dpi located in the vicinity of Arabidopsis transposable elements

DC-cluster name	Gene name	Gene description	TE similarity	TE name
chr1:17450567–17,451,109	At1g47530	MATE efflux family protein	1.3333	ARNOLDY1
chr1:26139675–26,140,148 chr1:26140251–26,140,500	At1g69530	Expansin A1	2.3000	RP1_AT
chr2:1681688–1,682,004	At2g04795	hypothetical protein	1.6000	ATHPOGON3
chr2:1681688–1,682,004	At2g04795	hypothetical protein	1.6250	ATHPOGON2
chr3:3587400–3,587,740	At3g11410	Phosphatase 2C	1.9000	ATCOPIA75LTR
chr3:3587400–3,587,740	At3g11410	Phosphatase 2C	1.2333	ATHATN4
chr3:9814548–9,815,346	At3g26720	Glycosyl hydrolase family 38 protein	2.3333	ATREP10B
chr3:9814548–9,815,346	At3g26720	Glycosyl hydrolase family 38 protein	1.7273	ATHPOGON3
chr3:20629820–20,629,940	At3g55610	delta 1-pyrroline-5-carboxylate synthetase B	2.8333	RP1 AT
chr4:5791975–5,792,114	At4g09030	arabinogalactan protein (AGP10).	1.1818	BOMZH1
chr2:2232130–2,232,414	At2g05840	20S proteasome subunit PAA2	1.7619	SIMPLEGUY1
			1.8333	TAG2
			1.6047	ATMUNX1
			1.4730	SIMPLEGUY1

siRNA DC-clusters differentially expressed in galls at 7 dpi located in promoter regions, with expression patterns inversely correlated with those of the associated differentially expressed genes and located in the vicinity of A. thaliana TE. The AGI gene name, the description of the encoded protein from TAIR, the TE similarity and TE name were indicated

ISSN: 1471-2164