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Table 5 siRNA DC-clusters differentially expressed in galls at 7dpi located in the vicinity of Arabidopsis transposable elements

From: Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

DC-cluster name Gene name Gene description TE similarity TE name
chr1:17450567–17,451,109 At1g47530 MATE efflux family protein 1.3333 ARNOLDY1
chr1:26139675–26,140,148 chr1:26140251–26,140,500 At1g69530 Expansin A1 2.3000 RP1_AT
chr2:1681688–1,682,004 At2g04795 hypothetical protein 1.6000 ATHPOGON3
1.6250 ATHPOGON2
chr3:3587400–3,587,740 At3g11410 Phosphatase 2C 1.9000 ATCOPIA75LTR
1.2333 ATHATN4
chr3:9814548–9,815,346 At3g26720 Glycosyl hydrolase family 38 protein 2.3333 ATREP10B
1.7273 ATHPOGON3
chr3:20629820–20,629,940 At3g55610 delta 1-pyrroline-5-carboxylate synthetase B 2.8333 RP1 AT
chr4:5791975–5,792,114 At4g09030 arabinogalactan protein (AGP10). 1.1818 BOMZH1
chr2:2232130–2,232,414 At2g05840 20S proteasome subunit PAA2 1.7619 SIMPLEGUY1
1.8333 TAG2
1.6047 ATMUNX1
1.4730 SIMPLEGUY1
  1. siRNA DC-clusters differentially expressed in galls at 7 dpi located in promoter regions, with expression patterns inversely correlated with those of the associated differentially expressed genes and located in the vicinity of A. thaliana TE. The AGI gene name, the description of the encoded protein from TAIR, the TE similarity and TE name were indicated