Table 7 siRNA DC-clusters differentially expressed in galls at 7 and/or 14dpi colocalised with differentially methylated regions in cyst nematode feeding sites
Gene name | Log2 G/R | Log2 Sync/R | Gene description | Clusters | CENSOR | |
|---|---|---|---|---|---|---|
7 dpi | 14 dpi | 5 + 15dpi | ||||
7 dpi DE DC clusters | ||||||
At1g32450 | −1.0 | −1.0 | −3.9 | Transmembrane nitrate transporter | chr1:11721631–11,721,864 | ATREP4 |
At2g05840 | 0.8 | No | 0.9 | 20S proteasome subunit | ch r2:2232130–2,232,414 | ATMUNX1& SIMPLEGUY1 & TAG1 |
At3g60140 | 0.7 | −2.1 | 2.7 | protein similar to beta-glucosidase | chr3:22214692–22,214,777 | AtSB2 |
At4g04830 | 1.9 | No | 0.5 | methionine sulfoxide reductase B5 | ch r4:2442915–2,443,871 ch r4:2444411–2,445,805 | VANDAL3 VANDAL3 |
At5g40480 | 0.7 | 0.7 | 1.3 | Embryo defective 3012 | chr5:16211264–16,212,381 | ATREP13 |
14 dpi DE DC clusters | ||||||
At2g23810 | −1.0 | −0.9 | −3.3 | Tetraspanin 8 | chr2:10139020–10,139,268 | BRODYAGA1A |
At5g49660 | No | −1.2 | −1.0 | C-terminally encoded peptide receptor 1 | ch r5:20165643–20,165,928 | ATHATN3 |