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Table 7 siRNA DC-clusters differentially expressed in galls at 7 and/or 14dpi colocalised with differentially methylated regions in cyst nematode feeding sites

From: Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

Gene name Log2 G/R Log2 Sync/R Gene description Clusters CENSOR
7 dpi 14 dpi 5 + 15dpi
7 dpi DE DC clusters
 At1g32450 −1.0 −1.0 −3.9 Transmembrane nitrate transporter chr1:11721631–11,721,864 ATREP4
 At2g05840 0.8 No 0.9 20S proteasome subunit ch r2:2232130–2,232,414 ATMUNX1& SIMPLEGUY1 & TAG1
 At3g60140 0.7 −2.1 2.7 protein similar to beta-glucosidase chr3:22214692–22,214,777 AtSB2
 At4g04830 1.9 No 0.5 methionine sulfoxide reductase B5 ch r4:2442915–2,443,871 ch r4:2444411–2,445,805 VANDAL3 VANDAL3
 At5g40480 0.7 0.7 1.3 Embryo defective 3012 chr5:16211264–16,212,381 ATREP13
14 dpi DE DC clusters
 At2g23810 −1.0 −0.9 −3.3 Tetraspanin 8 chr2:10139020–10,139,268 BRODYAGA1A
 At5g49660 No −1.2 −1.0 C-terminally encoded peptide receptor 1 ch r5:20165643–20,165,928 ATHATN3
  1. siRNA DC-clusters differentially expressed (DE) in galls at 14dpi located in the vicinity of Arabidopsis transposable elements. List of siRNA DC-clusters differentially expressed in galls at 7 dpi and/or 14 dpi located in promoter region, with expression patterns inversely correlated with those of the associated differentially expressed genes and that colocalise with differentially methylated regions in cyst nematode feeding sites. The AGI gene name, the description of the encoded protein from TAIR and the log2 values of galls/roots (G/R) at 7 and 14 dpi obtained from microarrays [32, 45] and the log2 values of syncytia/roots (Sync/R) at 5 and 15 dpi obtained from [38] were indicated