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Table 2 List of genes identified by GWAS that contained multiple neighboring significant SNPs and/or significant SNPs of low p-value

From: Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Trait Chr SNP Loc Number Description
PN.day6 10 1 LOC_Os10g09700 OsWAK110 receptor-like kinase
PAN 2 3 LOC_Os02g40410 expressed protein
4 LOC_Os02g40420 expressed protein
1 LOC_Os02g55910 monogalactosyldiacylglycerol synthase
4 LOC_Os02g56020 methyltransferase
1 LOC_Os02g56130 PCNA - Putative DNA replicative polymerase clamp
1 LOC_Os02g56630 OsWAK24 - OsWAK receptor-like protein
5 1 LOC_Os05g47670 zinc finger, C3HC4
2 LOC_Os05g47690 reticulon domain containing protein
1 LOC_Os05g47770 serine/threonine-protein kinase At1g18390 precursor
1 LOC_Os05g47780 E3 ubiquitin ligase
4 LOC_Os05g47790 expressed protein
10 1 LOC_Os10g03620 OsFBX344 - F-box domain containing protein
36 LOC_Os10g03660 OsFBX345 - F-box domain containing protein
20 LOC_Os10g03669 expressed protein
2 LOC_Os10g03730 OsFBX347 - F-box domain containing protein
2 LOC_Os10g03740 OsFBX348 - F-box domain containing protein
3 LOC_Os10g03770 expressed protein
3 LOC_Os10g03780 OsFBX351 - F-box domain containing protein
1 LOC_Os10g04470 conserved hypothetical protein
2 LOC_Os10g04480 expressed protein
25 LOC_Os10g04490 expressed protein
3 LOC_Os10g04510 expressed protein
2 LOC_Os10g04520 expressed protein
1 LOC_Os10g04560 hypothetical protein
3 LOC_Os10g05050 expressed protein
6 LOC_Os10g05160 expressed protein
2 LOC_Os10g05170 OsWAK100 receptor-like kinase
1 LOC_Os10g05180 26S proteasome regulatory subunit S5A
FG 4 3 LOC_Os04g08749 expressed protein
UFG 1 8 LOC_Os01g45120 expressed protein
7 2 LOC_Os07g04220 wound and phytochrome signaling involved receptor like kinase
  2 LOC_Os07g04270 hypothetical protein
  1 LOC_Os07g04290 alcohol oxidase-related protein
  1 LOC_Os07g04310 expressed protein
8 1 LOC_Os08g10330 SHR5-receptor-like kinase
  1 LOC_Os08g10430 NBS-LRR disease resistance protein
  1 LOC_Os08g10440 NBS-LRR disease resistance protein
12 1 LOC_Os12g36630 universal stress protein domain containing protein