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Table 2 RNA-seq statistics

From: Epigenetic modifications acetylation and deacetylation play important roles in juvenile hormone action

  dsmalE dsCBP
Samples MD1-MD3 MJ1-MJ3 MT1-MT3 CD1-CD3 CJ1-CJ3 CT1-CT3
Total no. of reads 90,280,120 64,052,276 86,015,875 98,406,728 100,327,204 94,045,683
No. of high-quality reads 80,437,710 57,466,708 54,928,048 86,047,960 79,067,179 79,188,207
Mapped reads to Exona 75,27,476 53,578,082 48,830,575 81,330,901 73,271,933 71,579,430
Percent reads mapped 83.59 93.29 87.89 93.36 92.97 90.37
Uniquely mapped readsb 70,309,618 49,895,642 45,547,725 75,753,713 68,994,581 67,063,490
  1. aExon regions of Tribolium castaneum genome
  2. bReads considered for downstream gene expression analysis
  3. The table is showing a summary of read statistics after Illumina Hi-seq 4000 sequencing. Total read counts for three biological replicates from each treatment varies within 64,000,000 to 101,000,000. Number of high quality reads indicates the number of reads left after read trimming and filtering (Quality control step). Percentage of high quality reads unambiguously mapped to reference Tribolium genome represented in the second last row. Uniquely mapped reads were considered for differential gene expression analysis. Further details of RNA-seq statistics per sample are given in Additional file 1: Table S2