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Table 2 Assembly and microsatellite loci detection statistics for transcriptome sequencing using Trinity

From: Microsatellite development from genome skimming and transcriptome sequencing: comparison of strategies and lessons from frog species

 

Amolops mantzorum

Quasipaa boulengeri

Total number of contigs

121,416

278,803

Average length of contigs

958

919

N50

1953

2080

Total number of SSRs

958

1554

Max RRLa

25

32

Mean RRL

16

15.7

Dinucleotide (%)

716 (74.74)

1174 (75.55)

Trinucleotide (%)

226 (23.59)

364 (23.42)

Tetranucleotide (%)

15 (1.57)

14 (0.91)

Pentanucleotide (%)

1 (0.10)

1 (0.06)

Hexanucleotide (%)

0

1 (0.06)

  1. a RRL repeat region length, is the length of repeat units
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BMC Genomics

ISSN: 1471-2164

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