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Table 2 Identities and relative expression of DEGs associated with anther and pollen development in Wucai

From: Comparative Transcriptome Analysis between Fertile and CMS Flower Buds in Wucai (Brassica campestris L.)

#

Gene name

Gene ID

log2 Ratio (S/F)

Up-Down-

Regulation

(S/F)

P-value

FDR

Nr-ID

Annotation

Note

1

A6

CL5312.Contig6

−2.944716046

Down

0.000000833

0.0000238

BAG16366.1

Tapetum-specific protein A6

Tapetum

2

ACA2

CL7501.Contig3

−22.02431

Down

1.32E-10

7.15E-09

AAF18608.2

Calcium-transporting ATPase 2, plasma membrane-type

 
  

CL9430.Contig2

−4.12692914

Down

0.00000702

0.000163392

XP_006404763.1

 
  

Unigene13893

−20.49563

Down

6.02E-08

0.00000216

AAF18608.2

 

3

ACOX1

CL10760.Contig1

−8.01825105

Down

6.27E-11

3.53E-09

XP_006410738.1

Peroxisomal acyl-coenzyme A oxidase 1

Cell wall

4

AGD10

Unigene2844

−22.26378

Down

2.08E-08

0.000000814

XP_006410680.1

ADP-ribosylation factor GTPase-activating protein

 

5

AGD13

Unigene3446

−4.082284653

Down

3.42E-18

4.05E-16

XP_006396608.1

ADP-ribosylation factor GTPase-activating protein AGD13

 

6

AGL18

Unigene20308

−17.94896

Down

0.000000392

0.0000119

XP_006416569.1

Agamous-like MADS-box protein AGL18

 

7

AMS

CL228.Contig1

−3.626573007

Down

0.0000214

0.000440987

XP_006409372.1

Transcription factor ABORTED MICROSPORES

Tapetum

  

CL228.Contig10

−3.211951041

Down

1.49E-09

7.07E-08

XP_006300017.1

Tapetum

  

CL228.Contig11

−3.981481531

Down

6.96E-15

6.28E-13

Tapetum

  

CL228.Contig2

−3.888023907

Down

1.88E-12

1.3E-10

CAD54298.1

Tapetum

  

CL228.Contig3

−6.49960103

Down

0.00000777

0.000178796

Tapetum

  

CL228.Contig4

−3.779024655

Down

5.58E-14

4.55E-12

XP_006300017.1

Tapetum

  

CL228.Contig7

−3.399639006

Down

1.8E-11

1.11E-09

Tapetum

  

CL228.Contig8

−3.618863472

Down

1.7E-09

7.93E-08

CAD54298.1

Tapetum

  

CL228.Contig9

−3.282505028

Down

9.96E-10

4.84E-08

XP_006300017.1

Tapetum

8

BT3

Unigene8957

−3.999145848

Down

0.000000327

0.0000102

XP_006307699.1

BTB/POZ and TAZ domain-containing protein 3

 

9

CCR2

CL13286.Contig4

−2.618288933

Down

9.76E-09

0.000000404

AEK27166.1

Cinnamoyl-CoA reductase 2

Cell wall

10

ENL2

CL9725.Contig1

−12.9847855

Down

6.75E-08

0.0000024

AAR13697.1

Early nodulin-like protein 2

Tapetum

11

GALE1

CL7725.Contig1

−5.650465262

Down

0.0000241

0.000490652

XP_006391772.1

UDP-glucose 4-epimerase 1

 

12

GEX1

CL6689.Contig1

−4.118156527

Down

4.93E-08

0.0000018

XP_006401451.1

Protein GAMETE EXPRESSED 1

 
  

CL6689.Contig2

−2.506677002

Down

0.0000292

0.000580342

 

13

GUN2

CL5998.Contig1

−6.849121307

Down

6.22E-24

1.09E-21

XP_006307252.1

Endoglucanase 2

Cell wall

14

MS1

CL11348.Contig1

−3.49023522

Down

0.0000132

0.000286238

XP_006400732.1

PHD finger protein MALE STERILITY 1

Tapetum

15

MYB39

CL668.Contig2

−4.224047618

Down

0.0000012

0.0000332

NP_200422.1

Transcription factor MYB39

Tapetum

16

NAS2

Unigene9840

−10.01145026

Down

5.04E-33

1.44E-30

XP_006413176.1

Nicotianamine synthase 2

 

17

ORTH2

CL8531.Contig2

−6.729731899

Down

3.32E-28

7.15E-26

XP_002886735.1

E3 ubiquitin-protein ligase ORTHRUS 2

Tapetum

  

CL8531.Contig6

−6.833897659

Down

4.79E-23

7.97E-21

Tapetum

18

PAL1

Unigene4968

−2.11264418

Down

3.77E-08

0.00000142

ABC69917.1

Phenylalanine ammonia-lyase 1

 

19

PAL2

Unigene23252

−3.176980409

Down

0.0000497

0.000916371

ADL09136.1

Phenylalanine ammonia-lyase 2

 

20

PEAM3

Unigene26733

−2.067508491

Down

6.93E-08

0.00000246

XP_006390538.1

Phosphoethanolamine N-methyltransferase 3

 

21

PGIP2

CL3211.Contig3

−4.490292387

Down

0.0000128

0.000278848

ABX46561.1

Polygalacturonase inhibitor 2

Cell wall

22

PLA2C

Unigene36790

−11.00893115

Down

3.58E-16

3.65E-14

XP_006412837.1

Phospholipase A2-gamma

 

23

PLRX1

CL9725.Contig2

−11.98149635

Down

3.92E-08

0.00000146

AAR13697.1

Pollen-specific leucine-rich repeat extensin-like protein 1

Tapetum

24

PME5

Unigene14803

−24.662

Down

2.79E-71

3.17E-68

ABC25451.1

Pectinesterase 5

Cell wall

  

Unigene37636

−24.55937

Down

3.24E-70

3.45E-67

XP_006397894.1

Cell wall

25

RBG7

Unigene958

−1.955925101

Down

0.00000713

0.000165484

NP_179760.1

Glycine-rich RNA-binding protein 7

Cell wall

26

RGP1

CL5431.Contig2

−3.796328409

Down

2.54E-20

3.52E-18

XP_006408433.1

UDP-arabinose mutase 1

Cell wall

27

TI10A

CL3440.Contig3

−1.838249753

Down

0.00000272

0.0000696

XP_006416530.1

jasmonate-zim-domain protein 1

 

28

TMK1

Unigene30627

−17.95435

Down

0.00000625

0.000147115

XP_002867400.1

Probable receptor protein kinase

Cell wall

29

TSM1

Unigene12653

−4.917563543

Down

0.0000129

0.000281326

NP_564916.2

Tapetum-specific methyltransferase 1

Tapetum

 

Unigene4469

−7.200986245

Down

0.00000372

0.0000924

XP_002888647.1

Tapetum

30

ZAT5

CL12866.Contig2

−17.40146

Down

0.0000171

0.000360205

NP_187658.1

Zinc finger protein

Cell wall

  

CL801.Contig1

−6.072505988

Down

6.22E-16

6.25E-14

XP_006398898.1

Cell wall

  

CL801.Contig4

−6.376284185

Down

0.000000604

0.0000178

Cell wall

  

CL801.Contig5

−17.48876

Down

0.0000089

0.000202113

XP_002871091.1

Cell wall

31

BT2

Unigene16869

4.243001335

Up

0.0000312

0.000613786

XP_004975990.1

BTB/POZ and TAZ domain-containing protein 2

 

32

SCC12

CL8357.Contig1

4.33729296

Up

0.00000218

0.0000571

XP_006405422.1

Sister chromatid cohesion 1 protein 2

 

33

TCMO

Unigene3794

4.003339344

Up

0.0000226

0.000461499

XP_006410152.1

Trans-cinnamate 4-monooxygenase

Cell wall

34

VAL2

CL7862.Contig2

6.699055286

Up

2.06E-15

1.96E-13

NP_194929.2

B3 domain-containing transcription repressor

Cell wall

  

CL7862.Contig7

8.577233976

Up

1.62E-19

2.14E-17

Cell wall

35

XPO1

CL3131.Contig8

17.77931

Up

0.00000304

0.0000768

XP_006400241.1

Exportin1 (XPO1) like protein

Â