Table 3 Annotation and relative expression of differentially expressed bHLH, MYB, NAC and WRKY transcription factor genes in Wucai
# | Gene ID | Annotation | Base Mean F | Base Mean S | log2 Ratio (S/F) | Up-Down Regulation (S/F) | P-value | FDR | Nr/Nt-ID |
|---|---|---|---|---|---|---|---|---|---|
bHLH | |||||||||
 1 | CL228.Contig10 | AMS | 409.1749872 | 44.15861763 | −3.211951041 | Down | 1.49E-09 | 7.07E-08 | XP_006300017.1 |
 2 | CL228.Contig2 |  | 846.3264726 | 57.16446004 | −3.888023907 | Down | 1.88E-12 | 1.3E-10 | CAD54298.1 |
 3 | CL228.Contig3 |  | 22.71136886 | 0.250996948 | −6.49960103 | Down | 0.00000777 | 0.000178796 | CAD54298.1 |
 4 | CL228.Contig11 |  | 929.7544629 | 58.86035859 | −3.981481531 | Down | 6.96411E-15 | 6.28153E-13 | XP_006300017.1 |
 5 | CL228.Contig8 |  | 1219.003283 | 99.22438599 | −3.618863472 | Down | 1.7E-09 | 7.93E-08 | CAD54298.1 |
 6 | CL9650.Contig1 | BH010 | 68.59317113 | 8.284434373 | −3.04958985 | Down | 0.00000726 | 0.000168143 | XP_006294062.1 |
 7 | CL4981.Contig2 | BH055 | 20.42367727 | 0.570787056 | −5.161146216 | Down | 0.0000481 | 0.000890179 | XP_006417224.1 |
 8 | CL11878.Contig2 | BH069 | 273.2838968 | 71.45109769 | −1.935372371 | Down | 0.0000331 | 0.000647096 | XP_006412645.1 |
 9 | Unigene35364 | BH089 | 1343.847101 | 69.02695614 | −4.283065324 | Down | 2.55E-23 | 4.31E-21 | XP_002892324.1 |
 10 | CL8320.Contig1 | BH091 | 354.1856344 | 2.682361084 | −7.04485843 | Down | 7.68E-30 | 1.83E-27 | XP_006410252.1 |
 11 | CL8320.Contig2 |  | 234.632662 | 4.474145004 | −5.712648033 | Down | 1.03E-12 | 7.33E-11 | XP_006410252.1 |
 12 | Unigene7797 | BH095 | 53.40631948 | 2.362570976 | −4.498580887 | Down | 1.08E-08 | 0.000000444 | XP_006393216.1 |
 13 | CL8360.Contig2 | BH100 | 474.3340898 | 0.0001 | −22.17747 | Down | 0.000000143 | 0.00000478 | XP_006411389.1 |
 14 | Unigene29999 | BH126 | 18.09145412 | 0.0001 | −17.46495 | Down | 0.0000168 | 0.0003553 | XM_002869626.1 |
 15 | CL7683.Contig2 | BH129 | 75.39194436 | 5.398710046 | −3.80372374 | Down | 2.68E-08 | 0.00000103 | XP_006411590.1 |
 16 | Unigene1322 | BH075 | 637.9841813 | 2792.211601 | 2.129815719 | Up | 4.23E-08 | 0.00000157 | XP_006415858.1 |
 17 | CL6643.Contig1 | BH077 | 0.0001 | 26.3978698 | 18.01006 | Up | 0.00000272 | 0.0000696 | ACB30989.1 |
 18 | CL3150.Contig4 | BH104 | 47.90423927 | 240.6065811 | 2.328450867 | Up | 0.000000366 | 0.0000112 | XP_002870316.1 |
 19 | CL3730.Contig2 | BH135 | 1.485983153 | 67.46448335 | 5.504638531 | Up | 2.93E-11 | 1.74E-09 | XP_006395335.1 |
 20 | CL10877.Contig2 | BH149 | 46.40107667 | 203.9150311 | 2.135737938 | Up | 0.00000403 | 0.000099 | XP_002866229.1 |
 21 | CL2773.Contig10 | LHWL3 | 60.30986683 | 235.7158239 | 1.966582657 | Up | 0.0000344 | 0.000666052 | NP_180686.2 |
MYB | |||||||||
 1 | CL13033.Contig1 | MY101 | 462.3621775 | 7.375614264 | −5.970116369 | Down | 1.89E-29 | 4.38E-27 | AF411970_1 |
 2 | CL13033.Contig2 |  | 552.9666991 | 27.31999076 | −4.3391637 | Down | 6.99E-21 | 1E-18 | AF411970_1 |
 3 | CL10091.Contig2 | GAM1 | 37.53982746 | 0.0001 | −18.51806 | Down | 0.0000439 | 0.000821047 | NP_191605.1 |
 4 | Unigene16369 | MY104 | 311.4872214 | 83.66750916 | −1.896433588 | Down | 0.0000341 | 0.000661013 | XP_006408602.1 |
 5 | CL10109.Contig1 | MY1R1 | 36.53415274 | 1.717675964 | −4.410715944 | Down | 0.00000123 | 0.000034 | XP_006297882.1 |
 6 | CL782.Contig1 |  | 42.56716483 | 0.959370325 | −5.471509378 | Down | 0.000000107 | 0.00000366 | XP_006394486.1 |
 7 | Unigene1680 |  | 2848.722771 | 6.101768627 | −8.866872039 | Down | 1.03E-21 | 1.55E-19 | XP_006394486.1 |
 8 | CL668.Contig1 | MYB38 | 752.2749053 | 43.38701927 | −4.115924585 | Down | 0.00000243 | 0.0000631 | NP_200422.1 |
 9 | CL668.Contig2 | MYB39 | 72.94632466 | 3.903357947 | −4.224047618 | Down | 0.0000012 | 0.0000332 | NP_200422.1 |
 10 | CL8689.Contig2 | MYB44 | 85.46534877 | 8.667702846 | −3.30161801 | Down | 5.52E-08 | 0.000002 | XP_006391000.1 |
 11 | CL10167.Contig2 |  | 55.89646529 | 1.738835419 | −5.006563761 | Down | 7.71E-10 | 0.000000038 | NP_173237.1 |
 12 | CL10167.Contig3 |  | 22.38440326 | 0.959370325 | −4.544262234 | Down | 0.0000475 | 0.000881123 | NP_173237.2 |
 13 | Unigene1657 |  | 35.26630754 | 1.508997926 | −4.546627802 | Down | 0.000000811 | 0.0000233 | AAC83612.1 |
 14 | CL12124.Contig1 | MYB86 | 174.6674392 | 3.599412499 | −5.600705435 | Down | 4.39E-20 | 5.99E-18 | XP_006416547.1 |
 15 | CL12124.Contig2 |  | 78.19330659 | 0.848258255 | −6.526397743 | Down | 1.18E-14 | 1.04E-12 | XP_006416547.1 |
 16 | Unigene2176 |  | 321.6680886 | 80.21008064 | −2.003717351 | Down | 0.00000411 | 0.000100816 | XP_006407153.1 |
 17 | CL6176.Contig3 | MB3R1 | 10.12504634 | 76.35690834 | 2.914830179 | Up | 0.00000206 | 0.0000544 | XP_006399657.1 |
 18 | CL4392.Contig3 | MYB28 | 8.25033752 | 156.5456644 | 4.245986602 | Up | 4.33E-10 | 0.000000022 | ACR48179.1 |
 19 | Unigene425 |  | 15.57701305 | 144.8393522 | 3.216963107 | Up | 0.00000604 | 0.000142804 | AFX96283.1 |
 20 | Unigene6538 | MYB29 | 11.11907995 | 85.93982834 | 2.950289479 | Up | 0.00000586 | 0.00013881 | ACR48181.1 |
 21 | Unigene36155 | MYB48 | 0.742994303 | 262.1628707 | 8.462896512 | Up | 8.61E-14 | 6.87E-12 | AFW74899.1 |
 22 | Unigene4420 | MYB59 | 0.0001 | 35.65819104 | 18.44387 | Up | 0.00000027 | 0.00000848 | NP_851226.1 |
NAC | |||||||||
 1 | Unigene27566 | NAC06 | 40.52594362 | 3.321941301 | −3.608747293 | Down | 0.00000538 | 0.00012842 | XP_006411314.1 |
 2 | CL1573.Contig1 | NAC18 | 39.29102704 | 0.821784004 | −5.579296819 | Down | 2.33E-08 | 0.000000909 | ACN62416.1 |
 3 | CL1573.Contig2 |  | 872.2221035 | 131.168863 | −2.733270259 | Down | 2.46E-11 | 1.48E-09 | XP_006406961.1 |
 4 | CL1573.Contig3 |  | 505.1184416 | 17.11619779 | −4.883187554 | Down | 1.48E-22 | 2.38E-20 | XP_002882948.1 |
 5 | CL7820.Contig1 | NAC25 | 114.7087842 | 0.0001 | −20.12954 | Down | 3.58E-22 | 5.55E-20 | AAB71483.1 |
 6 | CL7820.Contig2 |  | 4465.490482 | 7.822460828 | −9.156980403 | Down | 4.64E-38 | 1.66E-35 | NP_564771.1 |
 7 | Unigene11170 |  | 572.1354143 | 0.0001 | −22.44793 | Down | 1.44E-30 | 3.53E-28 | AAM65392.1 |
 8 | CL1394.Contig1 | NAC69 | 376.7708871 | 42.48727739 | −3.14858469 | Down | 3.24E-11 | 1.91E-09 | XP_006286761.1 |
 9 | Unigene19761 | NAC78 | 63.37497158 | 4.479459799 | −3.822516529 | Down | 0.000000543 | 0.0000162 | XP_006399623.1 |
 10 | CL1654.Contig1 |  | 1.494589233 | 109.339016 | 6.192915453 | Up | 2.7E-16 | 2.78E-14 | XP_006398899.1 |
 11 | Unigene22467 | NAC18 | 0.0001 | 26.72752603 | 18.02797 | Up | 0.000000402 | 0.0000122 | DAA48262.1 |
 12 | CL10884.Contig3 | NAC29 | 323.0703998 | 1086.313175 | 1.7495196 | Up | 0.00000775 | 0.00017832 | XP_006399904.1 |
 13 | CL5650.Contig1 | NAC31 | 134.1180934 | 613.9217676 | 2.194550945 | Up | 7.76E-08 | 0.00000273 | XP_006412943.1 |
 14 | CL1202.Contig2 | NAC42 | 17.5549512 | 122.8209502 | 2.806606779 | Up | 0.000000194 | 0.00000629 | XP_006411573.1 |
 15 | Unigene31751 | NAMB2 | 0.0001 | 45.35108693 | 18.79078 | Up | 7.94E-11 | 4.41E-09 | XP_006292493.1 |
WRKY | |||||||||
 1 | CL11391.Contig3 | WRKY2 | 352.3112665 | 104.7828505 | −1.749447996 | Down | 0.000031 | 0.000611096 | ACQ76801.1 |
 2 | Unigene18850 | WRKY9 | 64.21010222 | 0.618420761 | −6.698067731 | Down | 0.00000303 | 0.0000765 | AHB33821.1 |
 3 | Unigene16994 | WRKY10 | 62.20024848 | 0.0001 | −19.24656 | Down | 5.45E-13 | 3.98E-11 | XP_006392618.1 |
 4 | CL1378.Contig1 | WRKY58 | 239.5168401 | 2.26198877 | −6.726391516 | Down | 5.4E-17 | 5.87E-15 | AHB33854.1 |
 5 | CL1378.Contig2 |  | 287.5616426 | 0.890577165 | −8.334914915 | Down | 1.47683E-32 | 4.10153E-30 | XP_006408460.1 |
 6 | CL1378.Contig3 |  | 44.85334435 | 1.210367273 | −5.21169877 | Down | 7.66E-09 | 0.000000323 | AHB33854.2 |
 7 | CL1378.Contig4 |  | 21.15655342 | 0.0001 | −17.69075 | Down | 0.00000189 | 0.0000501 | NP_683519.2 |
 8 | Unigene1086 | WRKY64 | 198.2663101 | 0.618420761 | −8.324635083 | Down | 1.61E-09 | 7.54E-08 | AHB33859.1 |
 9 | Unigene37103 | WRKY66 | 65.05180056 | 0.0001 | −19.31123 | Down | 2.76E-15 | 2.59E-13 | AHB33861.1 |
 10 | Unigene3849 | WRKY19 | 0.0001 | 42.24559068 | 18.68844 | Up | 0.00000337 | 0.0000845 | XP_002869985.1 |
 11 | CL2120.Contig3 |  | 2.211765296 | 127.96661 | 5.85442531 | Up | 6.61E-16 | 6.61E-14 | XP_006399450.1 |
 12 | CL2284.Contig2 |  | 0.0001 | 44.62232571 | 18.76741 | Up | 0.00000015 | 0.00000499 | ACP30636.1 |
 13 | CL4008.Contig1 | WRKY32 | 6.738547034 | 57.69680762 | 3.09798204 | Up | 0.00000546 | 0.000130266 | AHB33838.1 |