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Table 3 Annotation and relative expression of differentially expressed bHLH, MYB, NAC and WRKY transcription factor genes in Wucai

From: Comparative Transcriptome Analysis between Fertile and CMS Flower Buds in Wucai (Brassica campestris L.)

# Gene ID Annotation Base Mean F Base Mean S log2 Ratio (S/F) Up-Down Regulation (S/F) P-value FDR Nr/Nt-ID
bHLH
 1 CL228.Contig10 AMS 409.1749872 44.15861763 −3.211951041 Down 1.49E-09 7.07E-08 XP_006300017.1
 2 CL228.Contig2   846.3264726 57.16446004 −3.888023907 Down 1.88E-12 1.3E-10 CAD54298.1
 3 CL228.Contig3   22.71136886 0.250996948 −6.49960103 Down 0.00000777 0.000178796 CAD54298.1
 4 CL228.Contig11   929.7544629 58.86035859 −3.981481531 Down 6.96411E-15 6.28153E-13 XP_006300017.1
 5 CL228.Contig8   1219.003283 99.22438599 −3.618863472 Down 1.7E-09 7.93E-08 CAD54298.1
 6 CL9650.Contig1 BH010 68.59317113 8.284434373 −3.04958985 Down 0.00000726 0.000168143 XP_006294062.1
 7 CL4981.Contig2 BH055 20.42367727 0.570787056 −5.161146216 Down 0.0000481 0.000890179 XP_006417224.1
 8 CL11878.Contig2 BH069 273.2838968 71.45109769 −1.935372371 Down 0.0000331 0.000647096 XP_006412645.1
 9 Unigene35364 BH089 1343.847101 69.02695614 −4.283065324 Down 2.55E-23 4.31E-21 XP_002892324.1
 10 CL8320.Contig1 BH091 354.1856344 2.682361084 −7.04485843 Down 7.68E-30 1.83E-27 XP_006410252.1
 11 CL8320.Contig2   234.632662 4.474145004 −5.712648033 Down 1.03E-12 7.33E-11 XP_006410252.1
 12 Unigene7797 BH095 53.40631948 2.362570976 −4.498580887 Down 1.08E-08 0.000000444 XP_006393216.1
 13 CL8360.Contig2 BH100 474.3340898 0.0001 −22.17747 Down 0.000000143 0.00000478 XP_006411389.1
 14 Unigene29999 BH126 18.09145412 0.0001 −17.46495 Down 0.0000168 0.0003553 XM_002869626.1
 15 CL7683.Contig2 BH129 75.39194436 5.398710046 −3.80372374 Down 2.68E-08 0.00000103 XP_006411590.1
 16 Unigene1322 BH075 637.9841813 2792.211601 2.129815719 Up 4.23E-08 0.00000157 XP_006415858.1
 17 CL6643.Contig1 BH077 0.0001 26.3978698 18.01006 Up 0.00000272 0.0000696 ACB30989.1
 18 CL3150.Contig4 BH104 47.90423927 240.6065811 2.328450867 Up 0.000000366 0.0000112 XP_002870316.1
 19 CL3730.Contig2 BH135 1.485983153 67.46448335 5.504638531 Up 2.93E-11 1.74E-09 XP_006395335.1
 20 CL10877.Contig2 BH149 46.40107667 203.9150311 2.135737938 Up 0.00000403 0.000099 XP_002866229.1
 21 CL2773.Contig10 LHWL3 60.30986683 235.7158239 1.966582657 Up 0.0000344 0.000666052 NP_180686.2
MYB
 1 CL13033.Contig1 MY101 462.3621775 7.375614264 −5.970116369 Down 1.89E-29 4.38E-27 AF411970_1
 2 CL13033.Contig2   552.9666991 27.31999076 −4.3391637 Down 6.99E-21 1E-18 AF411970_1
 3 CL10091.Contig2 GAM1 37.53982746 0.0001 −18.51806 Down 0.0000439 0.000821047 NP_191605.1
 4 Unigene16369 MY104 311.4872214 83.66750916 −1.896433588 Down 0.0000341 0.000661013 XP_006408602.1
 5 CL10109.Contig1 MY1R1 36.53415274 1.717675964 −4.410715944 Down 0.00000123 0.000034 XP_006297882.1
 6 CL782.Contig1   42.56716483 0.959370325 −5.471509378 Down 0.000000107 0.00000366 XP_006394486.1
 7 Unigene1680   2848.722771 6.101768627 −8.866872039 Down 1.03E-21 1.55E-19 XP_006394486.1
 8 CL668.Contig1 MYB38 752.2749053 43.38701927 −4.115924585 Down 0.00000243 0.0000631 NP_200422.1
 9 CL668.Contig2 MYB39 72.94632466 3.903357947 −4.224047618 Down 0.0000012 0.0000332 NP_200422.1
 10 CL8689.Contig2 MYB44 85.46534877 8.667702846 −3.30161801 Down 5.52E-08 0.000002 XP_006391000.1
 11 CL10167.Contig2   55.89646529 1.738835419 −5.006563761 Down 7.71E-10 0.000000038 NP_173237.1
 12 CL10167.Contig3   22.38440326 0.959370325 −4.544262234 Down 0.0000475 0.000881123 NP_173237.2
 13 Unigene1657   35.26630754 1.508997926 −4.546627802 Down 0.000000811 0.0000233 AAC83612.1
 14 CL12124.Contig1 MYB86 174.6674392 3.599412499 −5.600705435 Down 4.39E-20 5.99E-18 XP_006416547.1
 15 CL12124.Contig2   78.19330659 0.848258255 −6.526397743 Down 1.18E-14 1.04E-12 XP_006416547.1
 16 Unigene2176   321.6680886 80.21008064 −2.003717351 Down 0.00000411 0.000100816 XP_006407153.1
 17 CL6176.Contig3 MB3R1 10.12504634 76.35690834 2.914830179 Up 0.00000206 0.0000544 XP_006399657.1
 18 CL4392.Contig3 MYB28 8.25033752 156.5456644 4.245986602 Up 4.33E-10 0.000000022 ACR48179.1
 19 Unigene425   15.57701305 144.8393522 3.216963107 Up 0.00000604 0.000142804 AFX96283.1
 20 Unigene6538 MYB29 11.11907995 85.93982834 2.950289479 Up 0.00000586 0.00013881 ACR48181.1
 21 Unigene36155 MYB48 0.742994303 262.1628707 8.462896512 Up 8.61E-14 6.87E-12 AFW74899.1
 22 Unigene4420 MYB59 0.0001 35.65819104 18.44387 Up 0.00000027 0.00000848 NP_851226.1
NAC
 1 Unigene27566 NAC06 40.52594362 3.321941301 −3.608747293 Down 0.00000538 0.00012842 XP_006411314.1
 2 CL1573.Contig1 NAC18 39.29102704 0.821784004 −5.579296819 Down 2.33E-08 0.000000909 ACN62416.1
 3 CL1573.Contig2   872.2221035 131.168863 −2.733270259 Down 2.46E-11 1.48E-09 XP_006406961.1
 4 CL1573.Contig3   505.1184416 17.11619779 −4.883187554 Down 1.48E-22 2.38E-20 XP_002882948.1
 5 CL7820.Contig1 NAC25 114.7087842 0.0001 −20.12954 Down 3.58E-22 5.55E-20 AAB71483.1
 6 CL7820.Contig2   4465.490482 7.822460828 −9.156980403 Down 4.64E-38 1.66E-35 NP_564771.1
 7 Unigene11170   572.1354143 0.0001 −22.44793 Down 1.44E-30 3.53E-28 AAM65392.1
 8 CL1394.Contig1 NAC69 376.7708871 42.48727739 −3.14858469 Down 3.24E-11 1.91E-09 XP_006286761.1
 9 Unigene19761 NAC78 63.37497158 4.479459799 −3.822516529 Down 0.000000543 0.0000162 XP_006399623.1
 10 CL1654.Contig1   1.494589233 109.339016 6.192915453 Up 2.7E-16 2.78E-14 XP_006398899.1
 11 Unigene22467 NAC18 0.0001 26.72752603 18.02797 Up 0.000000402 0.0000122 DAA48262.1
 12 CL10884.Contig3 NAC29 323.0703998 1086.313175 1.7495196 Up 0.00000775 0.00017832 XP_006399904.1
 13 CL5650.Contig1 NAC31 134.1180934 613.9217676 2.194550945 Up 7.76E-08 0.00000273 XP_006412943.1
 14 CL1202.Contig2 NAC42 17.5549512 122.8209502 2.806606779 Up 0.000000194 0.00000629 XP_006411573.1
 15 Unigene31751 NAMB2 0.0001 45.35108693 18.79078 Up 7.94E-11 4.41E-09 XP_006292493.1
WRKY
 1 CL11391.Contig3 WRKY2 352.3112665 104.7828505 −1.749447996 Down 0.000031 0.000611096 ACQ76801.1
 2 Unigene18850 WRKY9 64.21010222 0.618420761 −6.698067731 Down 0.00000303 0.0000765 AHB33821.1
 3 Unigene16994 WRKY10 62.20024848 0.0001 −19.24656 Down 5.45E-13 3.98E-11 XP_006392618.1
 4 CL1378.Contig1 WRKY58 239.5168401 2.26198877 −6.726391516 Down 5.4E-17 5.87E-15 AHB33854.1
 5 CL1378.Contig2   287.5616426 0.890577165 −8.334914915 Down 1.47683E-32 4.10153E-30 XP_006408460.1
 6 CL1378.Contig3   44.85334435 1.210367273 −5.21169877 Down 7.66E-09 0.000000323 AHB33854.2
 7 CL1378.Contig4   21.15655342 0.0001 −17.69075 Down 0.00000189 0.0000501 NP_683519.2
 8 Unigene1086 WRKY64 198.2663101 0.618420761 −8.324635083 Down 1.61E-09 7.54E-08 AHB33859.1
 9 Unigene37103 WRKY66 65.05180056 0.0001 −19.31123 Down 2.76E-15 2.59E-13 AHB33861.1
 10 Unigene3849 WRKY19 0.0001 42.24559068 18.68844 Up 0.00000337 0.0000845 XP_002869985.1
 11 CL2120.Contig3   2.211765296 127.96661 5.85442531 Up 6.61E-16 6.61E-14 XP_006399450.1
 12 CL2284.Contig2   0.0001 44.62232571 18.76741 Up 0.00000015 0.00000499 ACP30636.1
 13 CL4008.Contig1 WRKY32 6.738547034 57.69680762 3.09798204 Up 0.00000546 0.000130266 AHB33838.1