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Table 2 Secondary metabolite gene clusters identified with AntiSMASH in Dickeya fangzhongdai genomes

From: Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates

  RAST IDs D. fangzhongdai strains
JS5 S1 B16 MK7 ND14b M074 M005 NCPPB3274
Chrysobactin 4020-4056a + + + + + + + +
Achromobactin 917-929a + + + + + + +/−c +
ind-vfm-expIR 2414-2478a + + + + + + + +
Zeamine 1047-1086a + + + + + + + +
Cyanobactin 3008-3027a + + + + + + + +
Thiopeptide 584-595a + + + + + + + +
transAT PKS/NRPS 4466-4509a + + + + + + + +
Arylpolyene 2584-2618a + + + + +
Bacteriocin 1483-1510a + + + + + + +
Nrps 4516-4553b + + + + (2)d
  1. agenes based on the ND14b Rast ID
  2. bgenes based on the JS5 Rast ID
  3. cgenome assembly problems for this region in M005
  4. dNCPPB3274 harbours two additional NRPS clusters, different from the cluster found in JS5, S1, B16 and MK7
  5. +, presence of the genetic cluster; +/−, partial gene cluster; −, absence of the genetic cluster