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Table 2 Secondary metabolite gene clusters identified with AntiSMASH in Dickeya fangzhongdai genomes

From: Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates

 

RAST IDs

D. fangzhongdai strains

JS5

S1

B16

MK7

ND14b

M074

M005

NCPPB3274

Chrysobactin

4020-4056a

+

+

+

+

+

+

+

+

Achromobactin

917-929a

+

+

+

+

+

+

+/−c

+

ind-vfm-expIR

2414-2478a

+

+

+

+

+

+

+

+

Zeamine

1047-1086a

+

+

+

+

+

+

+

+

Cyanobactin

3008-3027a

+

+

+

+

+

+

+

+

Thiopeptide

584-595a

+

+

+

+

+

+

+

+

transAT PKS/NRPS

4466-4509a

+

+

+

+

+

+

+

+

Arylpolyene

2584-2618a

+

+

+

+

+

Bacteriocin

1483-1510a

+

+

+

+

+

+

+

Nrps

4516-4553b

+

+

+

+

(2)d

  1. agenes based on the ND14b Rast ID
  2. bgenes based on the JS5 Rast ID
  3. cgenome assembly problems for this region in M005
  4. dNCPPB3274 harbours two additional NRPS clusters, different from the cluster found in JS5, S1, B16 and MK7
  5. +, presence of the genetic cluster; +/−, partial gene cluster; −, absence of the genetic cluster