Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates

Table 4 Genomic regions of the JS5 and ND14b genomic clades

Clade	Genomic region	Size of GR (nt)	Genes RAST ID	Presence of horizontal transfer signature	Predicted function	Region conserved in^c
JS5-like clade^a	GR1	7033	3204-3211^a	No	metabolism (putative)	D. dianthicola RNS04.9
JS5-like clade^a	GR2	11,303	3941-3945^a	No	Transport (putative)	–
	GR3	12,717	4354-4357^a	No	NRPS	–
ND14b-like clade^b	GR4	4729	317-323^b	No	metabolism (putative)	Leclercia sp. LSNIH3
ND14b-like clade^b	GR5	11,197	1736-1746^b	Yes	ICE (partial)	D. dadantii 3937
	GR6	11,493	2589-2598^b	No	metabolism (putative)	D. dadantii 3937
	GR7	9241	2906-2913^b	No	metabolism (putative)	–
	GR8	4732	3899-3903^b	No	type I pilus	–

^agenes based on the JS5 Rast ID
^bgenes based on the ND14b Rast ID
^cthe best hit in BLASTn analysis
Genomic regions found in each of the JS5 and Nd14b genomic clades that are absent from the other Dickeya fangzhongdai genomes are presented. Conserved regions share at least 70% identity over 70% sequence length

ISSN: 1471-2164