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Table 1 Evaluation of DeepSplice and state-of-the-art approaches for donor (acceptor) site classification on HS3D data set

From: Discerning novel splice junctions derived from RNA-seq alignment: a deep learning approach

 

Donor

Acceptor

Sensitivity

Specificity

Q9

Sensitivity

Specificity

Q9

LS-GKM

0.8679

0.8516

0.8595

0.8403

0.8319

0.8361

SVM + B

0.9406

0.9067

0.9212

0.9066

0.8797

0.8920

MM1-SVM

0.9256

0.9244

0.9247

0.8993

0.8869

0.8926

DM-SVM

0.9469

0.9339

0.9399

0.9215

0.9073

0.9136

MEM

0.9324

0.9275

0.9295

0.9153

0.8843

0.8978

LVMM2

0.9424

0.9242

0.9323

0.9122

0.8970

0.9039

DeepSplice

0.9571

0.9376

0.9465

0.9337

0.9139

0.9232

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BMC Genomics

ISSN: 1471-2164

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