Table 2 Expression of myoglobin and sulfotransferase 6b1 genes (FPKM) in the air-breathing organ, gill, brain, head kidney and liver of Clarias batrachus as determined by analysis of RNA-Seq datasets. RNA-Seq datasets from air-breathing organ and gill were generated from this project; those from brain (SRR2057993), head kidney (SRR2057995), and liver (SRR2052655) were downloaded from NCBI. Each continuous bold and italic gene cluster indicated tandemly duplicated genes. FPKM, Fragments Per Kilobase per Million mapped fragments
From: Genome sequence of walking catfish (Clarias batrachus) provides insights into terrestrial adaptation
Gene name | Gene ID | Air-breathing organ | Gill | Brain | Head kidney | Liver |
|---|---|---|---|---|---|---|
Myoglobin | g21109.t1 | 0 | 0 | 0 | 2.91 | 2.84 |
g21110.t1 | 0 | 0 | 8.48 | 0.85 | 4.14 | |
g21111.t1 | 0.25 | 0.18 | 3.14 | 1.57 | 1.53 | |
g21112.t1 | 0.59 | 0.05 | 1.45 | 1.55 | 0 | |
g21113.t1 | 0.09 | 0 | 4.48 | 9.88 | 2.92 | |
g21774.t1 | 4.52 | 5.07 | 0 | 1.02 | 0 | |
g23112.t1 | 0.46 | 0.76 | 0 | 0.58 | 0 | |
g2543.t1 | 0 | 0 | 26.84 | 25.61 | 5.11 | |
g2544.t1 | 0 | 0 | 15.71 | 12.23 | 3.31 | |
g7580.t1 | 0 | 0 | 0 | 2.32 | 0 | |
g8410.t1 | 0 | 0 | 17.4 | 23.41 | 3.31 | |
g8411.t1 | 0 | 0 | 0 | 0.59 | 0 | |
g8412.t1 | 0 | 0.56 | 16.23 | 13.52 | 3.27 | |
g8413.t1 | 0 | 0.16 | 0 | 0 | 0 | |
g8414.t1 | 6.18 | 139.88 | 838.66 | 643.35 | 145 | |
Sulfotransferase 6b1 | g16408.t1 | 0.2 | 1.16 | 0 | 0 | 0 |
g20979.t1 | 2.78 | 1.22 | 3.96 | 1.94 | 1.95 | |
g20980.t1 | 23.9 | 28.5 | 13.36 | 18.93 | 2.09 | |
g20981.t1 | 3.42 | 3.79 | 6.16 | 3.34 | 1.28 | |
g20982.t1 | 2.91 | 2.42 | 1.57 | 1.62 | 1.28 | |
g20983.t1 | 0 | 0.58 | 0 | 0 | 0 | |
g20984.t1 | 0.54 | 0.53 | 0.57 | 1.43 | 1.75 | |
g20985.t1 | 9.37 | 16.57 | 5.6 | 4.94 | 0.26 | |
g20986.t1 | 24.61 | 14.81 | 89.49 | 44.81 | 0 | |
g24152.t1 | 0.13 | 0.53 | 0 | 0 | 0 | |
g24341.t1 | 0 | 0.06 | 0 | 0 | 0 | |
g24380.t1 | 0 | 0.31 | 0 | 0 | 15.45 |