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Table 3 A list of genes differentially expressed between the gill and the air-breathing organ in Clarias batrachus

From: Genome sequence of walking catfish (Clarias batrachus) provides insights into terrestrial adaptation

Category name Gene name Gene ID FDR
Acid-base balance Solute carrier family 4 member 1 g12078.t1 0
Carbonic anhydrase g8816.t1 0
Carbonic anhydrase 2 g3019.t1 1.60E-07
Carbonic anhydrase 4 g7074.t1 7.21E-07
Carbonic anhydrase 9 g411.t1 5.37E-05
Carbonic anhydrase 6 g456.t1 7.39E-04
Ion homeostasis Sodium/potassium-transporting ATPase subunit alpha-1 g15272.t1 0
Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 g16367.t1 0
Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 g5688.t1 0
Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 g9634.t1 0
Sodium potassium-transporting ATPase subunit beta-233 g9311.t1 0
Adenosylhomocysteinase 3 g1970.t1 2.72E-10
Adenosylhomocysteinase 3 g1011.t1 1.19E-08
Calsequestrin-1 g3495.t1 5.23E-04
Calsequestrin-2 g9400.t1 3.67E-02
Pendrin g2970.t1 0
Sodium/hydrogen exchanger 3 g3908.t1 0
Elastic fiber formation Transforming growth factor beta-2 g2430.t1 8.22E-03
Fibulin-1 g4468.t1 9.66E-08
Transforming growth factor beta-3 g14668.t1 2.68E-02
Fibulin-2 g20129.t1 5.73E-03
Bone morphogenetic protein 4 g189.t1 8.79E-06
Fibronectin g6260.t1 0
Fibronectin g12205.t1 9.01E-03
Latent-transforming growth factor beta-binding protein 3 g14988.t1 8.22E-03
Oxygen binding and transport Hemoglobin subunit alpha g20835.t1 0
Hemoglobin subunit beta g20836.t1 3.55E-11
Hemoglobin subunit alpha g20837.t1 0
Hemoglobin subunit beta g20838.t1 0
Hemoglobin subunit beta g21168.t1 0
Hemoglobin subunit alpha g21169.t1 0
Hemoglobin subunit beta g21170.t1 0
Hemoglobin subunit alpha g21171.t1 0
Angiogenesis Sphingosine 1-phosphate receptor 1 g5232.t1 7.89E-03
Fibronectin g6260.t1 8.79E-06
Semaphorin-3E g5331.t1 6.86E-05
C-X-C chemokine receptor type 4 g23603.t1 0
Neuropilin-1a g3757.t1 5.00E-02
Cadherin-5 g21848.t1 7.36E-03
BMP-binding endothelial regulator protein g7031.t1 2.71E-02
Bone morphogenetic protein 4 g189.t1 5.73E-03
Bone morphogenetic protein 5 g11279.t1 2.76E-03
Bone morphogenetic protein 8A g14806.t1 9.26E-03
Bone morphogenetic protein receptor type-1A g14843.t1 9.45E-05
Transforming growth factor beta-2 g2430.t1 8.22E-03
Transforming growth factor beta-3 g14668.t1 2.68E-02
Rho-related GTP-binding protein RhoB g5763.t1 1.23E-09
Thrombospondin-1 g5480.t1 3.33E-02
Mothers against decapentaplegic homolog 6 g4737.t1 6.93E-13
Mothers against decapentaplegic homolog 6 g4739.t1 3.88E-11
Mothers against decapentaplegic homolog 3 g3356.t1 4.28E-03