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Fig. 1 | BMC Genomics

Fig. 1

From: Plant stress RNA-seq Nexus: a stress-specific transcriptome database in plant cells

Fig. 1

The framework of the database construction in PSRN. The plant stress RNA-Seq datasets were collected from NCBI GEO and SRA, and then all samples were classified into stress-specific subsets for each dataset. In the RNA-Seq data processing, Bowtie2 and eXpress were used to calculate transcript expressions of each RNA-Seq dataset with references collected from Phytozome, Ensembl Plants, and PopGenIE. Finally, we calculated the log2 scale T-test and FDR between two subsets belonging to the same dataset and then constructed the user interface for PSRN

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