Table 2 Test results on independent test set of 12 MCF7 cells obtained from GSE86316. Two passes of the cell identification process was invoked since two cell lines (G41726.MCF7.5 and G28020.KPL-1.1) both pass the correlation/p-value test. By removing common variants between two cells and with deep coverage requirement, the difference of correlations is much larger than the first test
Samples | First test with all variants (17,730) | Second test after removing common variants (2631) | ||||
|---|---|---|---|---|---|---|
Match cell names | corr. Coef | p-value | Match cell names | corr. Coef | p-value | |
Sample 1 | G41726.MCF7.5 | 0.91 | 8.59E-21 | G41726.MCF7.5 | 0.53 | 0.084 |
G28020.KPL-1.1 | 0.89 | 1.74E-19 | G28020.KPL-1.1 | 0.34 | 0.996 | |
G25206.NCI-H1694.1 | 0.43 | 0.781 | ||||
sample 2 | G41726.MCF7.5 | 0.9 | 6.63E-20 | G41726.MCF7.5 | 0.49 | 0.309 |
G28020.KPL-1.1 | 0.88 | 1.07E-18 | G28020.KPL-1.1 | 0.32 | 1 | |
G30560.TO_175.T.1 | 0.42 | 0.863 | ||||
sample 3 | G41726.MCF7.5 | 0.9 | 5.14E-20 | G41726.MCF7.5 | 0.5 | 0.266 |
G28020.KPL-1.1 | 0.88 | 6.73E-19 | G28020.KPL-1.1 | 0.35 | 0.993 | |
G30560.TO_175.T.1 | 0.42 | 0.869 | ||||
Sample 4 | G41726.MCF7.5 | 0.9 | 1.64E-20 | G41726.MCF7.5 | 0.55 | 0.053 |
G28020.KPL-1.1 | 0.89 | 3.50E-19 | G28020.KPL-1.1 | 0.37 | 0.983 | |
G30560.TO_175.T.1 | 0.42 | 0.847 | ||||
sample 5 | G41726.MCF7.5 | 0.9 | 4.22E-20 | G41726.MCF7.5 | 0.49 | 0.304 |
G28020.KPL-1.1 | 0.88 | 7.66E-19 | G28020.KPL-1.1 | 0.32 | 0.999 | |
G30560.TO_175.T.1 | 0.42 | 0.843 | ||||
sample 6 | G41726.MCF7.5 | 0.9 | 5.94E-20 | G41726.MCF7.5 | 0.5 | 0.283 |
G28020.KPL-1.1 | 0.88 | 1.10E-18 | G28020.KPL-1.1 | 0.31 | 1 | |
G41731.Hs_936.T.5 | 0.42 | 0.859 | ||||
sample 7 | G41726.MCF7.5 | 0.9 | 3.48E-20 | G41726.MCF7.5 | 0.51 | 0.185 |
G28020.KPL-1.1 | 0.88 | 6.27E-19 | G28020.KPL-1.1 | 0.35 | 0.995 | |
G30560.TO_175.T.1 | 0.42 | 0.854 | ||||
sample 8 | G41726.MCF7.5 | 0.9 | 1.90E-20 | G41726.MCF7.5 | 0.52 | 0.122 |
G28020.KPL-1.1 | 0.89 | 3.88E-19 | G28020.KPL-1.1 | 0.33 | 0.999 | |
G30560.TO_175.T.1 | 0.41 | 0.89 | ||||
sample 9 | G41726.MCF7.5 | 0.91 | 1.89E-21 | G41726.MCF7.5 | 0.56 | 0.025 |
G28020.KPL-1.1 | 0.9 | 2.53E-20 | G28020.KPL-1.1 | 0.39 | 0.954 | |
G25206.NCI-H1694.1 | 0.48 | 0.455 | ||||
sample 10 | G41726.MCF7.5 | 0.91 | 3.85E-21 | G41726.MCF7.5 | 0.55 | 0.037 |
G28020.KPL-1.1 | 0.9 | 4.70E-20 | G28020.KPL-1.1 | 0.38 | 0.971 | |
G25206.NCI-H1694.1 | 0.46 | 0.572 | ||||
sample 11 | G41726.MCF7.5 | 0.91 | 5.55E-21 | G41726.MCF7.5 | 0.54 | 0.058 |
G28020.KPL-1.1 | 0.89 | 7.66E-20 | G28020.KPL-1.1 | 0.38 | 0.966 | |
G25206.NCI-H1694.1 | 0.46 | 0.571 | ||||
sample 12 | G41726.MCF7.5 | 0.9 | 1.42E-20 | G41726.MCF7.5 | 0.53 | 0.086 |
G28020.KPL-1.1 | 0.89 | 1.68E-19 | G28020.KPL-1.1 | 0.37 | 0.985 | |
G25206.NCI-H1694.1 | 0.45 | 0.642 | ||||