Fig. 6
From: NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data
Analysis of DNA methylation in E. coli using NanoMod. Data of the top three ranked modifications are shown. ‘p-value/Comb Pv’ is the combined p-values calculated using the Stouffer’s method, ‘KS test/KS Pv’ is the p-value calculated using Kolmogorov-Smirnov test. ‘DS 1’ represents the non-methylated sample, and ‘DS 2’ represents the methylated sample. In each panel, the first line is the position of the base in the reference genome followed by the base in reads. The position is based on the reference genome. For reverse strand, the 3′ to 5′ of reads is from right to left while for forward strand of reads is from left to right