Exploring the unmapped DNA and RNA reads in a songbird genome

BMC Genomics

Table 2 RNA read counts per tissue type and per major BLAST alignment result group. The unpaired reads indicate the reads that were orphaned in the quality trimming of the RNA reads (all the tissues combined)

Group	Blood	Bone marrow	Brain	Breast	Intestine	Kidney	Liver	Lung	Testis	Unpaired
Parus major	4295	19,657	33,516	300,763	55,999	72,625	41,800	20,834	13,693	935,271
Aves	10,796,873	6,087,566	9,646,728	8,395,675	48,812,307	7,570,425	5,637,931	3,758,819	5,039,638	9,193,238
Other animals	2,109,001	435,891	581,626	572,849	303,246	429,018	245,629	177,476	128,091	428,660
Plants	1,949,545	75,408,648	399,632	409,233	325,667	559,343	344,760	244,482	182,009	1,982,031
Other	506,723	552,931	449,697	244,110	295,119	413,895	332,886	262,519	212,792	285,692
Sum	14,493,076	82,422,401	11,016,164	9,732,532	49,708,365	8,918,388	6,534,019	4,412,787	5,548,801	12,779,187

ISSN: 1471-2164