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Table 1 Cedrela odorata RNA sequence yield after various quality filtering and optimization steps, and final transcriptome summary statistics

From: Genomic resources for the Neotropical tree genus Cedrela (Meliaceae) and its relatives

Raw Reads Number of sequences Minimum length Maximum length Sum of bases Average Length
Read pairs 150,329,597 101 101 15,183,289,297 101
Read Trimming and Quality Filtering via Trimmomatic
 Read 1 144,314,023 36 101 14,516,997,898 100.6
 Read 2 144,314,023 36 101 14,401,698,529 99.8
 Sequences removed 6,015,574    666,291,399  
Read Extension via FLASH
 Un-extended read 1 95,727,746 36 101 9,626,867,686 100.6
 Un-extended read 2 95,727,746 36 101 9,514,449,431 99.4
 Super reads 48,586,277 36 192 7,845,887,083 161.5
Final Assembly
 CEOD-NYBG Transcriptome 52,181 200 37,635 47,811,997 916.3
  1. All lengths are in base pairs