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Table 2 Sequencing metrics for Cedrela and Meliaceae samples

From: Genomic resources for the Neotropical tree genus Cedrela (Meliaceae) and its relatives

Specimen SRA Accession Sequence Yield On-Target Yield On-Target (%) Chloroplast (CP) Yield CP (%) CP Depth CP (%) Covered ‘N’ Bases (%)
C. angustifolia 88 SRS3532111 1,515,526 488,207 32.2 248,243 16.4 157 100.0 0.1
C. angustifolia 143 SRS3532109 8,462,020 3,191,296 37.7 901,138 10.6 568 100.0 0.1
C. fissilis 9 SRS3532073 1,174,195 286,398 24.4 93,257 7.9 59 99.9 0.2
C. fissilis 19 SRS3531955 5,431,374 2,122,651 39.1 333,680 6.1 210 99.9 0.2
C. fissilis 112 SRS3532019 1,750,937 376,881 21.5 151,391 8.6 96 99.8 0.4
C. fissilis 130 SRS3532093 5,351,355 2,154,295 40.3 135,883 2.5 86 99.9 0.2
C. fissilis 140 SRS3532018 12,183,129 5,047,225 41.4 403,902 3.3 255 100.0 0.1
C. fissilis 211 SRS3532001 1,272,124 259,059 20.4 167,826 13.2 106 100.0 0.2
C. fissilis 230 SRS3532122 3,251,712 1,183,526 36.4 106,353 3.3 67 99.9 0.4
C. fissilis 254 SRS3532102 17,394,724 5,583,057 32.1 643,227 3.7 405 100.0 0.1
C. fissilis 264 SRS3532060 19,290,108 7,776,152 40.3 356,979 1.9 225 100.0 0.1
C. fissilis 292 SRS3532121 7,116,518 2,752,495 38.7 1,866,075 26.2 1176 100.0 0.1
C. montana 50 SRS3532121 5,561,468 2,026,840 36.4 577,438 10.4 364 100.0 0.2
C. odorata 10 SRS3532068 4,009,101 1,472,131 36.7 273,812 6.8 173 99.8 0.4
C. odorata 52 SRS3532030 12,254,507 4,791,273 39.1 618,594 5.0 390 100.0 0.1
C. odorata 162 SRS3531967 8,942,300 3,574,795 40.0 756,725 8.5 477 100.0 0.1
C. odorata 185 SRS3532120 5,713,214 2,177,026 38.1 382,876 6.7 241 100.0 0.1
C. odorata 202 SRS3532089 6,372,915 2,366,009 37.1 116,791 1.8 74 99.7 0.4
C. odorata 222 SRS3532005 10,421,206 4,017,316 38.5 289,695 2.8 183 99.8 0.3
C. odorata 277 SRS3531957 6,794,076 2,539,070 37.4 309,154 4.6 195 99.8 0.5
C. odorata 287 SRS3532135 438,310 6566 1.5 35,604 8.1 25 90.2 7.7
C. saltensis 75 SRS3532020 29,081,506 10,692,874 36.8 831,948 2.9 524 100.0 0.1
C. saltensis 102 SRS3532010 5,252,123 2,107,682 40.1 672,165 12.8 424 100.0 0.1
C. saltensis 186 SRS3532110 1,829,249 554,830 30.3 125,974 6.9 79 100.0 0.2
G. guidonia 2 SRS3532153 5,211,243 68,501 1.3 92,122 1.8 78 74.2 19.5
G. guidonia 4 SRS3532152 6,710,368 100,652 1.5 129,500 1.9 105 77.8 13.9
G. guidonia 7 SRS3532151 6,850,155 101,252 1.5 81,731 1.2 74 69.8 17.8
G. guidonia 9 SRS3532150 14,213,046 206,827 1.5 197,446 1.4 139 89.3 13.5
G. guidonia 10 SRS3532124 7,833,412 91,070 1.2 69,582 0.9 69 63.9 15.0
G. guidonia 11 SRS3532123 9,166,583 123,598 1.3 279,357 3.0 194 90.9 7.3
G. guidonia 13 SRS3532149 9,909,255 133,845 1.4 259,749 2.6 184 88.9 7.6
G. guidonia 15 SRS3532148 10,634,632 148,498 1.4 267,334 2.5 185 91.1 7.6
G. guidonia 17 SRS3532147 10,900,380 128,635 1.2 138,537 1.3 108 80.8 13.3
G. guidonia 19 SRS3532146 16,194,976 195,256 1.2 342,985 2.1 229 94.5 8.3
S. mahagoni 21 SRS3532156 16,927,562 1,051,671 6.2 1,530,129 9.0 966 99.8 1.5
S. mahagoni 22 SRS3532155 18,098,858 1,113,548 6.2 3,806,990 21.0 2399 100.0 0.5
T. tuberculata 1 SRS3531991 3,823,599 39,222 1.0 54,256 1.4 159 89.8 17.1
T. tuberculata 3 SRS3531995 5,915,718 60,793 1.0 92,170 1.6 76 76.4 14.2
T. tuberculata 6 SRS3531996 6,159,511 63,116 1.0 140,155 2.3 110 80.0 11.4
T. tuberculata 8 SRS3531994 6,595,654 70,395 1.1 59,560 0.9 50 74.4 23.5
T. tuberculata 12 SRS3531993 11,354,222 92,063 0.8 283,424 2.5 56 60.9 8.3
T. tuberculata 18 SRS3531989 10,145,721 103,682 1.0 225,870 2.2 196 91.3 12.2
T. tuberculata 20 SRS3531990 8,374,551 91,146 1.1 117,705 1.4 90 82.5 13.2
  1. Metrics include: SRA Accession number; total sequence yield (in bp), sequenced reads with identity to the gene target (‘On-Target Yield’, in bp); percent of sequenced reads with gene target identity (‘On-Target (%)’); sequenced reads with chloroplast identity (‘Chloroplast (CP) Yield’, in bp); percent of sequenced reads with CP identity (‘CP (%)’); depth of coverage across the CP reference genome (‘CP Depth’); the percentage of the CP reference genome covered at 1X depth (‘CP [%] Covered’); and the percentage of ‘N’ bases in the specimen chloroplast genome (‘N’ Bases [%])