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Table 2 List of genes involved in nutrient transport or metabolism in Xac regulated by DSF/Rpf-mediated QS during pathogenic process

From: Diffusible signal factor (DSF)-mediated quorum sensing modulates expression of diverse traits in Xanthomonas citri and responses of citrus plants to promote disease

Locus tag

Gene name

Log2Fold Change (Wt/∆rpfF)

Annotation/ Protein function

Carbohydrates transport and metabolism

XAC0029

egl

1.34

cellulase

XAC0425

glgA

1.03

glycogen synthase

XAC0429

glgY

1.04

malto-oligosyltrehalose synthase

XAC0612

engXCA

1.53

cellulase

XAC1038

gtrB

1.12

glycosyl transferase

XAC1363

araJ

1.32

MFS transporter

XAC1633

gcd

2.06

glucose dehydrogenase

XAC2125

gtrB

1.07

glycosyl transferase

XAC2494

yieO

1.29

drug resistance translocase

XAC3073

 

1.00

GH18 family; chitinase-like glycosyl hydrolase

XAC3120

glk

1.36

glucokinase

XAC3212

gcd

1.05

glucose dehydrogenase

XAC3533

 

1.23

Glycosyltransferase, GT2 family

XAC3921

ugt

1.52

glucosyltransferase

XAC0217

lgtB

−1.06

glycosyltransferase

XAC0299

 

−2.16

polysaccharide /chitin deacetylase

XAC0575

ganB

−1.98

arabinogalactan endo-1,4-beta-galactosidase

XAC1286

abfA

−1.09

alpha-L-arabinofuranosidase

XAC1308

bga

−1.18

beta-galactosidase

XAC1309

galA

−1.49

arabinogalactan endo-1,4-beta-galactosidase

XAC1556

fucP

−1.43

glucose-galactose transporter

XAC1557

scrK

−1.49

fructokinase

XAC1558

 

−1.46

putative N-acylglucosamine 2-epimerase

XAC1770

celA

−1.03

cellulase

XAC1771

 

−1.02

sialic acid-specific 9-O-acetylesterase

XAC1793

celD

−2.46

glucan 1,4-beta-glucosidase

XAC1794

folk

−2.38

sodium/glucose cotransport protein

XAC1812

hmsF

−1.72

HmsF protein /Polysaccharide deacetylase

XAC1813

hmsH

−2.06

HmsH protein /substrate-specific transmembrane transporter

XAC2501

fruB

−1.73

multiphosphoryl transfer protein

XAC2502

fruK

−1.68

1-phosphofructokinase

XAC2503

fruA

−1.79

PTS system fructose-specific transporter subunit II

XAC3474

cit1

−1.08

citrate carrier protein

XAC3487

cebR

−2.20

transcriptional regulator

XAC3489

fyuA

−1.49

TonB-dependent sucrose outer membrane transporter

XAC3490

 

−1.22

amylosucrase or alpha amylase

XAC4195

ndvB/celAP

−1.23

NdvB protein/ cellobionic acid phosphorylase

XAC4355

 

−1.34

Glyco_hydro like

XAC4361

ttuB

−1.51

MFS transporter

Amino acid transport and metabolism

XAC0336

metE

1.72

5-methyltetrahydropteroyltriglutamate-methyltransferase

XAC0465

 

1.37

metalloproteinase

XAC1214

gcvP

1.09

glycine dehydrogenase

XAC2547

dapA

1.06

dihydrodipicolinate synthetase

XAC4326

uahA

6.50

urea amidolyase

XAC4327

uahA

5.92

allophanate hydrolase

XAC0174

phhA

−1.14

phenylalanine 4-monooxygenase

XAC0204

glnA

−3.39

glutamine synthetase

XAC0205

glnB

−3.01

nitrogen regulatory protein P-II

XAC0206

amtB

−2.78

ammonium transporter

XAC0300

pucG

−2.08

serine-pyruvate aminotransferase

XAC0301

amaB

−2.72

allantoate amidohydrolase

XAC1433

asnB

−1.19

asparagine synthetase B

XAC1820

thrA

−1.24

bifunctional aspartokinase I/homoserine dehydrogenase I

XAC1821

thrB

−1.20

homoserine kinase

XAC1823

thrC

−1.24

threonine synthase

XAC1828

hisG

−2.32

ATP phosphoribosyltransferase

XAC1829

hisD

−2.02

histidinol dehydrogenase

XAC1830

hisC

−1.94

histidinol-phosphate aminotransferase

XAC1831

hisB

−1.73

imidazole glycerol-phosphate dehydratase/phosphatase

XAC1832

hisH

−1.36

imidazole glycerol phosphate synthase subunit HisH

XAC1833

hisA

−1.61

1-(5-phosphoribosyl)-5- imidazole-4-carboxamide isomerase

XAC1834

hisF

−1.51

imidazole glycerol phosphate synthase subunit HisF

XAC1835

hisI

−1.12

phosphoribosyl-AMP cyclohydrolase

XAC3451

ilvC

−2.15

ketol-acid reductoisomerase

XAC3452

ilvG

−1.69

acetolactate synthase 2 catalytic subunit

XAC3453

ilvM

−1.49

acetolactate synthase isozyme II small subunit

XAC3454

tdcB

−1.71

threonine dehydratase

XAC3455

leuA

−1.22

2-isopropylmalate synthase

Lipid transport and metabolism

XAC0159

estA1

1.15

carboxylesterase type B

XAC1037

 

1.12

membrane protein

XAC1316

mmsB

1.03

3-hydroxyisobutyrate dehydrogenase

XAC0375

aes

−1.42

lipase

XAC2012

fadA

−1.25

acetyl-CoA acetyltransferase

XAC2013

fadB

−1.66

3-hydroxyacyl-CoA dehydrogenase

XAC3300

estA

−1.10

esterase

XAC3486

fabG

−3.14

3-ketoacyl-ACP reductase

XAC3959

 

−1.69

Acyl-CoA delta-9-desaturase

Inorganic ion transport and metabolism

XAC1578

phoX

1.34

phosphate-binding protein

XAC1579

oprO

1.50

polyphosphate-selective porin O

XAC0296

 

−2.50

monoxygenase

XAC0310

vanB

−3.94

vanillate O-demethylase oxidoreductase

XAC0311

vanA

−3.07

vanillate O-demethylase oxygenase

XAC0742

 

−1.45

RcnB containg protein

XAC0999

cirA

−1.04

colicin I receptor

XAC3168

bfeA

−1.55

ferric enterobactin receptor

XAC3169

bfeA

−1.17

ferric enterobactin receptor

XAC3472

oprO

−1.82

polyphosphate-selective porin O

XAC3484

oprO

−2.90

porin