Table 7 Summary of citrus DEGs genes involved in plant hormone metabolisms
ID | Locus | Log2Fold Change (Wt/∆rpfF) | Annotation/ Protein function |
|---|---|---|---|
Auxin biosynthesis, metabolism, and signaling | |||
XLOC_012174 | Cs5g20410 | 1.22 | Indole-3-acetate beta-D-glucosyltransferase (IAGLU) |
XLOC_031022 | – | 1.38 | Indole-3-acetate beta-D-glucosyltransferase (IAGLU) |
XLOC_005577 | Cs2g23750 | 2.45 | UDP-glucosyltransferase acting on IBA (indole-3-butyric acid), affects auxin homeostasis |
XLOC_029081 | orange1.1 t02620 | 1.65 | SAUR-like auxin-responsive protein family |
XLOC_003150 | Cs2g06290 | 1.00 | Aluminium induced protein with YGL and LRDR motifs, auxin-responsive |
XLOC_015754 | Cs6g17000 | −1.61 | Probable auxin efflux carrier component 1c (PIN1c) |
XLOC_020295 | Cs7g31320 | −1.19 | Auxin transporter-like protein 1 (PIN-like protein 1) |
XLOC_008042 | Cs3g10670 | −1.28 | NAD(P)-linked oxidoreductase superfamily protein, auxin regulated |
Abscisic acid (ABA) -related genes | |||
XLOC_004564 | Cs2g03270 | −1.21 | 9-cis-epoxycarotenoid dioxygenase for ABA biosynthesis |
XLOC_004925 | Cs2g10990 | −1.71 | UDP glycosyltransferase (UGT) for ABA biosynthesis |
XLOC_017286 | Cs7g02850 | 2.07 | GRAM domain-containing protein, ABA-responsive protein-related |
XLOC_017832 | Cs7g13470 | 2.64 | GRAM domain-containing protein, ABA-responsive protein-related |
XLOC_012807 | Cs5g32930 | 1.29 | membrane-bound protein (Arabidopsis thaliana TSPO-related), induced by ABA |
Ethylene - related genes | |||
XLOC_010327 | Cs4g05190 | 1.48 | flavanone 3 hydroxylase, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, involved in ethylene synthesis |
XLOC_004668 | Cs2g05280 | 1.08 | ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ERF1) |
XLOC_014405 | Cs5g29870 | 1.86 | ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ERF1) |
XLOC_024633 | – | 1.36 | ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family(ERF1) |
XLOC_007284 | Cs3g23270 | 1.79 | DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1) |
XLOC_005573 | Cs2g23660 | − 1.31 | Ethylene-responsive transcription factor 4 (Ethylene-responsive element-binding factor 4 homolog) (EREBP-3) |
XLOC_003119 | Cs2g05620 | −1.32 | Ethylene-responsive transcription factor 4 (Ethylene-responsive element-binding factor 4 homolog) (EREBP-3) |
XLOC_001696 | Cs1g07950 | −1.17 | ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF-4) |
XLOC_001450 | Cs1g03280 | −1.07 | ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ERF13) |
XLOC_014725 | – | −2.28 | ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ERF-6) |
XLOC_024283 | Cs9g13620 | −2.24 | ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ERF104) |
XLOC_023353 | Cs9g13610 | −2.04 | ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ERF104) |
XLOC_003353 | Cs2g09980 | −1.39 | Ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) |
XLOC_028605 | orange1.1 t01663 | −1.38 | Adenine nucleotide alpha hydrolases-like superfamily protein, involved in response to stress |
XLOC_002875 | Cs2g01100 | −1.97 | DUF247 domain containing plant protein, probably involved in ethylene signal transduction |
XLOC_004471 | Cs2g01150 | −1.43 | DUF247 domain containing plant protein, probably involved in ethylene signal transduction |
XLOC_004467 | Cs2g01090 | −1.01 | DUF247 domain containing plant protein, probably involved in ethylene signal transduction |
XLOC_014014 | Cs5g22160 | −1.18 | DUF247 domain containing plant protein, probably involved in ethylene signal transduction |
Cytokinin - related genes | |||
XLOC_023917 | Cs9g06010 | −1.51 | cytokinin synthase for cytokinin biosynthesis |
XLOC_003491 | Cs2g12620 | −1.14 | putative adenylate isopentenyltransferase (IPT), involved in cytokinin biosynthesis |
XLOC_008154 | Cs3g12960 | − 1.59 | UDP-Glycosyltransferase superfamily protein, involved in cytokinin biosynthesis |
XLOC_030591 | orange1.1 t05518 | 1.01 | UDP-glucosyl transferase 85A5 (UGT85A5), involved in cytokinin metabolic process |
XLOC_030963 | – | 1.47 | DON-Glucosyltransferase, UDP-Glucosyl transferase superfamily protein, involved in cytokinin metabolic process |
Gibberellic acid (GA)- related genes | |||
XLOC_019477 | Cs7g14940 | −1.17 | gibberellin 2-oxidase (GA2OX), involved in gibberellin metabolic process |
XLOC_028715 | orange1.1 t01909 | −1.81 | CYP701A cytochrome p450 family protein, involved in gibberellin biosynthesis |
XLOC_005279 | Cs2g17800 | −1.57 | ARM (Armadillo-type fold) repeat superfamily protein, involved in GA signal transduction |
XLOC_005280 | Cs2g17820 | −1.14 | ARM (Armadillo-type fold) repeat superfamily protein, involved in GAsignal transduction |
XLOC_008817 | Cs3g26100 | −1.11 | GA-responsive GAST like protein |
XLOC_006493 | Cs3g07395 | 1.16 | Gibberellin-regulated family protein |
Salicylic acid (SA) - related genes | |||
XLOC_001130 | Cs1g23160 | 1.00 | Methyl salicylate (MeSA) esterase-like protein, involved in MeSA hydrolysis to SA |
XLOC_005805 | Cs2g28310 | −1.04 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, involved in SA metabolic process |
XLOC_016863 | Cs6g18050 | −1.33 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, involved in SA metabolic process |
Jasmonic acid (JA) - related genes | Â | ||
XLOC_029628 | orange1.1 t03726 | 1.35 | 12-oxophytodienoic acid reductases, involved in JA biosynthesis |
XLOC_029630 | orange1.1 t03729 | 1.64 | FMN-containing oxidoreductases, involved in JA biosynthesis |
XLOC_020298 | Cs7g31430 | 1.05 | S-adenosyl-L-methionine: jasmonic acid carboxyl methyltransferase (JMT), involved in JA metabolic process to form methyljasmonate (MeJA) |
XLOC_026677 | orange1.1 t03773 | −1.51 | Chloroplast lipoxygenase required for wound-induced JA accumulation in Arabidopsis |
XLOC_029950 | orange1.1 t04376 | −2.04 | Chloroplast lipoxygenase required for wound-induced JA accumulation in Arabidopsis |
XLOC_002571 | Cs1g24440 | −1.22 | S-adenosyl-L-methionine: jasmonic acid carboxyl methyltransferase (JMT), involved in JA metabolic process to form methyljasmonate (MeJA) |
Brassinosteroid (BR) - related genes | |||
XLOC_010301 | Cs4g04730 | −1.10 | cycloartenol synthase 1 (CAS1), involved in the biosynthesis of BRs |
XLOC_012247 | Cs5g21830 | −1.12 | C-8 sterol isomerase, involved in the biosynthesis of BRs |
XLOC_002765 | – | − 2.43 | Leucine-rich receptor-like protein kinase family protein, involved in BR signaling pathways |
XLOC_006131 | – | −1.52 | Leucine-rich receptor-like protein kinase family protein, involved in BR signaling pathways |