Table 1 Comparison of s·nr to competing tools
From: s·nr: a visual analytics framework for contextual analyses of private and public RNA-seq data
Tool | s·nr | DEIVA | DEGUST | Oasis | Glimma | |
|---|---|---|---|---|---|---|
Features | Locate & identify genes | ✓ | ✓ | ✓ | ✓ | ✓ |
Interactive plots | ✓ | ✓ | ✓ | ✗ | ✓ | |
DE analysis pipeline | ✗ | ✗ | ✓ | ✓ | ✗ | |
Databases | Biomart | ✗ | KEGG | ✗ | ✗ | |
User data | ✓ | ✓ | ✓ | ✓ | ✓ | |
Public data | ✓ | ✗ | ✗ | ✗ | ✗ | |
Compare data | ✓ | ✗ | ✗ | ✗ | ✗ | |
Show data similarity | ✓ | ✗ | ✓ | ✗ | ✗ | |
Web-based | ✓ | ✓ | ✓ | ✓ | ✗ | |
License | MIT | MIT | GPLv3 | Closed source | LGPL | |
Dependencies | Development | node.js, R, Docker | node.js | Ruby | No custom deployment | R |
Server | 15GB RAM with provided data | No custom deployment |