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Table 1 The basic information of selected miRNAs and their corresponding predicted target genes for qRT-PCR validation

From: A dynamic degradome landscape on miRNAs and their predicted targets in sugarcane caused by Sporisorium scitamineum stress

No.

miRNA name

Predicted target gene ID

Predicted target gene annotation

Cleavage site

Category

1

miR168a-5p

Sugarcane_Unigene_BMK.66779

Protein argonaute 1B (AGO 1B)

984

0

2

miR5293

Sugarcane_Unigene_BMK.40335

Auxin-induced protein (AIP)

720

1

3

miR160a

Sugarcane_Unigene_BMK.63027

Auxin response factor 8 (ARF8)

879

0

4

nov-mir-132

Sugarcane_Unigene_BMK.28594

Cinnamoyl-CoA reductase (CCR)

588

1

5

nov-mir-143

Sugarcane_Unigene_BMK.64656

Ethylene insensitive 3-like 3 protein (EIL3)

1740

1

6

nov-mir-63

Sugarcane_Unigene_BMK.75694

Glycerol kinase (GK)

1790

0

7

miR396e-5p

Sugarcane_Unigene_BMK.60551

Growth-regulating factor 8 (GRF8)

465

0

8

nov-mir-66

Sugarcane_Unigene_BMK.60551

Growth-regulating factor 8 (GRF8)

465

0

9

nov-mir-18

Sugarcane_Unigene_BMK.60551

Growth-regulating factor 8 (GRF8)

465

0

10

miR5368

Sugarcane_Unigene_BMK.51989

Hypersensitive-induced response protein 1 (HIR1)

866

1

11

nov-mir-10

Sugarcane_Unigene_BMK.62668

Mildew resistance locus o (MLO)

510

1

12

miR858b

gi35098237

Myb-related protein Hv33 (MYB2)

524

1

13

nov-mir-97

Sugarcane_Unigene_BMK.51113

Protein phosphatase 2C (PP2C)

192

1

14

miR162a

Sugarcane_Unigene_BMK.67816

S-adenosylmethionine decarboxylase (SAMDC)

1696

2

15

miR529-3p

Sugarcane_Unigene_BMK.64654

Ubiquitin carboxyl-terminal hydrolase isozyme L5-like (UCH-L5)

864

0

  1. Cleavage site, nucleotide number from 5′ end of cDNA; Category, the “category” of this cleaveage site