|
Sample name
|
Total reads
|
Tags number
|
Tags percent
|
Clean reads
|
Q30
|
Clean reads after Rfam alignment
|
Mapped data
|
Mapped data percentage
|
|---|
|
Y0
|
18,665,458
|
3280
|
0.02%
|
18,662,178
|
94.29%
|
6,613,553
|
2,748,695
|
41.56%
|
|
Y2
|
21,777,063
|
5049
|
0.02%
|
21,772,014
|
94.45%
|
8,270,381
|
3,333,316
|
40.30%
|
|
Y5
|
22,944,082
|
16,062
|
0.07%
|
22,928,020
|
94.59%
|
8,609,667
|
3,446,802
|
40.03%
|
|
R0
|
19,451,881
|
11,752
|
0.06%
|
19,440,129
|
93.73%
|
6,342,529
|
2,490,391
|
39.26%
|
|
R2
|
18,549,222
|
12,119
|
0.07%
|
18,537,103
|
94.56%
|
7,226,017
|
3,151,567
|
43.61%
|
|
R5
|
20,999,522
|
4469
|
0.02%
|
20,995,053
|
94.46%
|
7,007,751
|
3,001,075
|
42.83%
|
- Total reads, total raw reads of sequencing; Tags number, reads number with adaptor; Tags percent, proportion of reads with adaptors in total reads; Clean reads, clean reads numbers after filtering; Q30, percentage of Q30; Clean reads after Rfam alignment, reads numbers of samples compared with sugarcane reference sequences (sugarcane transcriptome under smut pathogen stress [11], GSS database, and EST database in NCBI); Mapped data, reads numbers of samples compared to sugarcane reference sequences; Mapped data percentage, percentage of mapped numbers in the clean reads after Rfam alignment. Y0 and R0 mean the genes in the libraries of YC05–179 and ROC22 inoculated with sterile water at 0 d, respectively. Y2 and Y5 mean the genes in the libraries of YC05–179 inoculated with Sporisorium scitamineum at 2 and 5 d, respectively. R2 and R5 mean the genes in the libraries of ROC22 inoculated with S. scitamineum at 2 and 5 d, respectively. YC05–179, smut-resistant genotype; ROC22, smut-susceptible genotype
