Fig. 4

a Identification of an 89 kb deletion affecting ADG by genome sequencing screen captures from the IGV program depicting aligned reads around BTA12: 22890419–22,979,469 bp (top panel) after mapping to the UMD3.1 reference genome. The low read depths was indicative of deletions, which was confirmed by PCR. b LD plot of SNPs covering the entire CNV region at BTA12. Linkage-disequilibrium pattern across the CNV region and flanking regions for the 34 SNPs. Six haplotypes are shown as predicted by Haploview