Table 1 Ubiquitin monomers, polyubiquitin and ubiquitin fusion proteins in Bigelowiella natans. Proteins from JGI/NCBI nr correspond to the B. natans strain CCMP2755 while proteins from MMETSP include the strains CCMP623, 1242, 1258, 1259, and 2755. When found in multiple B. natans strains in MMETSP (with 100% identity), a single representative protein ID is listed. Ubiquitin monomers and polyubiquitin proteins are based on strain CCMP2755 only
From: Ubiquitin fusion proteins in algae: implications for cell biology and the spread of photosynthesis
Ubiquitin | Length (AA) | Fusion Partner | Protein ID | Database | CCMP Strains in MMETSP | |
|---|---|---|---|---|---|---|
Type | Domains | |||||
fusion | 1 | 461 | actin1 | 87,880 | JGI | 1258, 1259, 2755 |
fusion | 3 | 648 | actin1 | 0185245994 | MMETSP | 1242 |
fusion | 1 | 459 | actin2 | 48,466 | JGI | 623, 1242, 1258,1259 |
fusion | 2 | 512 | actin2 | 0114194990 | MMETSP | 2755 |
fusion | 1 | 454 | actin3 | 52,823 | JGI | 623, 1242, 1258, 1259, 2755 |
fusion | 1 | 456 | actin4 | 145,879 | JGI | 623, 1258, 1259 |
fusion | 1 | 369 | F-actin capping protein | 84,922 | JGI | 1258, 1259, 2755 |
fusion | 3* | 646 | IMP1 | 232,559 | JGI | 2755 |
fusion | 1.75 | 379 | IMP1 | 0172219668 | MMETSP | 623, 1258 |
fusion | < 1 | 470 | IMP2 | 221,357 | JGI | 623, 1242, 1258, 1259, 2755 |
fusion | < 1 | 370 | IMP3 | 0114185324 | MMETSP | 1242, 1259, 2755 |
fusion | 1 | 446 | NBR1-like | 128,778 | JGI | 623, 1242, 1259, 623 |
fusion | 1 | 220 | NiSOD | 36,102 | JGI | – |
fusion | 1 | 220 | NiSOD | 53,597 | JGI | 623, 1242, 1258, 1259, 2755 |
fusion | 1 | 221 | ribosomal P1 | 46,016 | JGI | 1242, 1258, 1259, 2755 |
fusion | 1 | 221 | ribosomal P2 | 51,851 | JGI | 623, 1242, 1258, 1259, 2755 |
fusion | 1 | 130 | ribosomal protein L40 | AAP34635 | NCBI nr | 623, 1258, 1259, 2755 |
fusion | 1 | 157 | ribosomal S27 | 51,387 | JGI | 1258, 1259, 2755 |
fusion | 2 | 273 | zinc ring finger | 0114182200 | MMETSP | 623, 1258, 1259, 2755 |
fusion | 2 | 614 | hypothetical protein | 70,850 | JGI | 623, 1242 |
fusion | 2 | 832 | hypothetical protein | 233,447 | JGI | 623, 1242, 1258, 1259, 2755 |
fusion | 1 | 200 | hypothetical protein | AAP34639 | NBCI nr | 623, 1242, 1258, 1259, 2755 |
poly | 3 | 220 | – | 46,610 | JGI | – |
poly | 1.5 | 135 | – | 55,557 | JGI | – |
poly | 1.5* | 163 | – | 86,080 | JGI | – |
poly | 2* | 163 | – | 42,651 | JGI | – |
poly | 2.5 | 205 | – | 52,846 | JGI | – |
poly | 2* | 162 | – | 33,962 | JGI | – |
poly | 4 | 308 | – | AAM51223 | NCBI nr | – |
monomer | 1 | 59 | – | 32,874 | JGI | – |
monomer | 1 | 100 | – | 32,975 | JGI | – |
monomer | 1 | 76 | – | 47,445 | JGI | – |
monomer | 1 | 190 | – | 86,593 | JGI | – |