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Table 2 Terminal inverted repeats (TIRs) and target-site duplication (TSDs) of PePIF1 and other PIF/Harbinger-like transposable elements

From: PePIF1, a P-lineage of PIF-like transposable element identified in protocorm-like bodies of Phalaenopsis orchids

Element

Full length (bp)

TIR length (bp)

TIR sequence

TSD

Length of ORF1 (a.a.)

Length of TPase (a.a.)

Reference

Accession no.

PePIF1

5053

19

GGGYCYGTTTGGGGCAGCT

TTA

272

427

This study

 

DcMaster-a

4432

22

GKGYCTGTTTGGSRTTGCKGTT

3 bp

353

425

Grzebelus et al., 2006

AC144478

AtPIF2

4229

20

GGKGGTGTTATTGGTTAGTG

TTA

303

399

Zhang et al., 2001

AF007271

OsPIF1

7365

15

GGCCTYGTTTGGCTG

TTA

-a

398

Zhang et al., 2001

AC025098

OsPIF2

4777

14

GGGGTTGTTTGGTT

ATA

303

411

Zhang et al., 2001

AP001111

ZmPIFa

3728

14

GGGCCCGTTTGTTT

TTA

-a

298

Zhang et al., 2001

AF412282

Harbinger

1530

25

GGTCCTGTTTGTTTGTCCATTTGGA

3 bp

-a

-a

Kapitonov and Jurka, 1999

JX556412

  1. a: ORF1 not found