Table 2 Summary of sequencing data

Total reads

59,201,226

63,343,254

Clean reads

55,771,784 (94.21%)

59,251,576 (93.54%)

clean_data_base

5,539,214,099 (93.57%)

5,884,364,132 (92.90%)

Total mapped

44,370,452 (79.56%)

48,590,106 (82.01%)

Multiple mapped

11,474,064 (20.57%)

13,179,113 (22.24%)

Uniquely mapped

32,896,388 (58.98%)

35,410,993 (59.76%)

Read1 mapped

22,194,071 (39.79%)

24,307,230 (41.02%)

Read2 mapped

22,176,381 (39.76%)

24,282,876 (40.98%)

Reads map to ‘+’

22,124,348 (39.67%)

24,215,890 (40.87%)

Reads map to ‘-’

22,246,104 (39.89%)

24,374,216 (41.14%)

Reads mapped in proper pairs

20,253,005 (36.31%)

22,432,511 (37.86%)