Fig. 8

Overlaps between F. fujikuroi and F. oxysporum shared genes activated or repressed by light or by the carS mutation. a Overlaps between activated or repressed genes by light or by carS mutation between F. oxysporum and F. oxysporum. Genes without orthologs in the other species are indicated with an asterisk. The overlap between the genes activated by light in F. fujikuroi and F. oxysporum is significant, with an odds ratio enrichment of 9.15 and a p-value < 2.2 × 10^− 16. The overlap between the genes repressed by light in F. fujikuroi and F. oxysporum is also significant with, an odds ratio enrichment of 6.27 and a p-value < 2.2 × 10^− 16 (p values computed with the Fisher’s exact test). b Representation of overlaps between the Venn diagrams shown above. Only genes with orthologs in the F. fujikuroi (F. fuj.) and F. oxysporum (F. oxy.) genomes are considered. c Box-plot representations of the fold changes in the expression of genes simultaneously activated by light and carS mutation (common light carS⁻) or only by light (common light) in F. fujikuroi and F. oxysporum compared to those activated specifically in only one of the species (specific light and specific carS⁻). There were only three genes activated only by the carS mutation in both Fusarium species (common carS⁻), and therefore the box-plot is not represented