Table 1 E. grandis organellar genome characteristics
From: The plastid and mitochondrial genomes of Eucalyptus grandis
Metric | Mitochondria | Plastid |
|---|---|---|
Genome size (bp) | 478,813 | 160,109 |
GC content | 44.80% | 36.90% |
WGS coverage | ~700x | ~3456x |
WGS insert size | 475 bp | 475 bp |
WGS read length | 100 bp | 100 bp |
Total length of homologous regions in the nuclear genome | 1,256,558 bp | 751,886 bp |
% of inter-organellar DNA transfers | 6% (28,123 bp) | NA |
Protein coding genes | 39 | 84 (76 unique) |
tRNA | 20 | 38 (20 unique) |
rRNA | 4 (3 unique) | 8 (4 unique) |
Coding genes with introns | 9 | 11 |
tRNA with introns | 0 | 8 |
# of predicted editing sites (PREP/PREPACT) | 470/505 | 49/53 |
Editing sites/gene (PREP/PREPACT) | 12/13 | 0.6/0.7 |
% of genome repeat elements | 2.47% | 3.05% |