Skip to main content

Table 2 The sequencing datasets used in the experiment

From: SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies

Dataset Mushroom Eel Worm D1 D2 D3
Scientific Name Termitomyces eurhizus Anguilla japonica Aeolosoma Viride R. Sphaeroides M. abscessus V. cholerae
Accession number unpublished PRJEB25708 unpublished SRR522246 SRA043447 SRA037376
# reads (M) 196.8 306.3 98.2 16.3 8.7 7.0
Assembly size (Mbp) 77.0 1022.0 741 4.6 5.6 5.0
Sequencing depth ~ 250 ~ 160 ~ 230 245.2 194.3 195.7
Read length 25–251 35–201 35–301 25–251 25–251 25–251
Reference Genome (NCBI accession number) N/A N/A N/A R.sphaeroides 2.4.1 M.abscessus ATCC 19977 V.cholerae 01 biovar eltor str. N16961