Table 2 The sequencing datasets used in the experiment
From: SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies
Dataset | Mushroom | Eel | Worm | D1 | D2 | D3 |
|---|---|---|---|---|---|---|
Scientific Name | Termitomyces eurhizus | Anguilla japonica | Aeolosoma Viride | R. Sphaeroides | M. abscessus | V. cholerae |
Accession number | unpublished | PRJEB25708 | unpublished | SRR522246 | SRA043447 | SRA037376 |
# reads (M) | 196.8 | 306.3 | 98.2 | 16.3 | 8.7 | 7.0 |
Assembly size (Mbp) | 77.0 | 1022.0 | 741 | 4.6 | 5.6 | 5.0 |
Sequencing depth | ~ 250 | ~ 160 | ~ 230 | 245.2 | 194.3 | 195.7 |
Read length | 25–251 | 35–201 | 35–301 | 25–251 | 25–251 | 25–251 |
Reference Genome (NCBI accession number) | N/A | N/A | N/A | R.sphaeroides 2.4.1 | M.abscessus ATCC 19977 | V.cholerae 01 biovar eltor str. N16961 |