SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies

BMC Genomics

Table 4 Profile of tagged labels and PM% for each dataset

reads %^a	Mushroom	Eel 1300^b	Eel 500	Eel 400	Worm 1300	Worm 620	D1	D2	D3
P	49.8	39.3	34.9	33.4	6.8	17.6	3.5	54.5	71.1
S	30.1	28.7	33.1	34.7	44.5	41.0	8.5	28.4	22.6
C	5.0	3.7	6.1	6.0	12.0	10.4	81.2	15.9	5.4
O	1.3	3.8	8.3	8.1	4.8	6.6	0.2	0.1	0.2
M	6.1	14.2	10.1	10.4	11.1	11.0	0.5	0.0	0.1
F	6.6	6.9	6.9	6.9	20.8	13.1	4.9	0.9	0.5
N	1.2	3.5	0.1	0.1	0.0	0.2	1.3	0.2	0.2
PM%	12.5	12.0	14.9	15.0	35.9	26.1	59	11.4	4.3

^aThe profile is based on BWA-MEM algorithm for greater tolerance in varied read length except PM%. PM% is based on the average score of BWA MEM and BWA backtrack, and considers both the fail-to-map reads and low-score clip reads as shown in Methods
^bThe number indicates the insert size of the specie

ISSN: 1471-2164