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Table 4 Profile of tagged labels and PM% for each dataset

From: SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies

reads %a Mushroom Eel 1300b Eel 500 Eel 400 Worm 1300 Worm 620 D1 D2 D3
P 49.8 39.3 34.9 33.4 6.8 17.6 3.5 54.5 71.1
S 30.1 28.7 33.1 34.7 44.5 41.0 8.5 28.4 22.6
C 5.0 3.7 6.1 6.0 12.0 10.4 81.2 15.9 5.4
O 1.3 3.8 8.3 8.1 4.8 6.6 0.2 0.1 0.2
M 6.1 14.2 10.1 10.4 11.1 11.0 0.5 0.0 0.1
F 6.6 6.9 6.9 6.9 20.8 13.1 4.9 0.9 0.5
N 1.2 3.5 0.1 0.1 0.0 0.2 1.3 0.2 0.2
PM% 12.5 12.0 14.9 15.0 35.9 26.1 59 11.4 4.3
  1. aThe profile is based on BWA-MEM algorithm for greater tolerance in varied read length except PM%. PM% is based on the average score of BWA MEM and BWA backtrack, and considers both the fail-to-map reads and low-score clip reads as shown in Methods
  2. bThe number indicates the insert size of the specie