Skip to main content

Table 5 Assembly evaluation of the de novo assembly datasets

From: SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies

Dataseta Mushroom Eel Worm
#Scaffoldsb 800 7804 7280
Assembly size (Mbp) 77 1022 740
Max Scaffolds (Kbp) 2357 14,119 1562
N25 (Kbp) 959 4137 239
N50 (Kbp) 587 2148 138
N75 (Kbp) 293 954 78
L99 453 3474 6995
GC% 46.34 42.37 31.43
  1. aThese de novo assembly datasets don’t normally have reference genomes
  2. bThe scaffolds are assembled by All-paths LG and evaluated by QUAST