Table 6 Assembly evaluation of the three GAGE-B datasets
From: SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies
Dataseta | D1 | D2 | D3 |
|---|---|---|---|
#Scaffolds | 109 | 912 | 1848 |
Assembly size (Mbp) | 4.6 | 5.6 | 5.0 |
N50 (Kbp) | 552 | 313 | 350 |
Max Scaffolds (Kbp) | 1233 | 1346 | 737 |
NG25 (Kbp) | 1233 | 1346 | 555 |
NG50 (Kbp) | 552 | 313 | 356 |
NG75 (Kbp) | 204 | 173 | 232 |
LG99 | 22 | 23 | 80 |
GC% | 68.66 | 61.65 | 44.66 |
Indels ≥5 | 7 | 10 | 6 |
Inversions | 0 | 0 | 0 |
Relocation | 4 | 2 | 4 |
Translocation | 1 | 0 | 1 |