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Table 6 Assembly evaluation of the three GAGE-B datasets

From: SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies

Dataseta D1 D2 D3
#Scaffolds 109 912 1848
Assembly size (Mbp) 4.6 5.6 5.0
N50 (Kbp) 552 313 350
Max Scaffolds (Kbp) 1233 1346 737
NG25 (Kbp) 1233 1346 555
NG50 (Kbp) 552 313 356
NG75 (Kbp) 204 173 232
LG99 22 23 80
GC% 68.66 61.65 44.66
Indels ≥5 7 10 6
Inversions 0 0 0
Relocation 4 2 4
Translocation 1 0 1
  1. aThe scaffolds are assembled by SPAdes and evaluated by QUAST in GAGE mode