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Fig. 3 | BMC Genomics

Fig. 3

From: Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds

Fig. 3

From raw to filtered reads. Trimming of raw reads with Trimmomatic removed adapters and low-quality reads. Trimmed reads were further processed with poly-A / poly-T removal with PrinSeq. The resulting reads were then filtered to remove chloroplastic, mitochondrial and ribosomal RNA reads. The total number of reads left after each step is indicated for samples M+ (1), M+ (2), NM (1) and NM (2)

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