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Table 1 Summary of GO terms associated with both the genome- and transcriptome-derived transcripts and respective DEG sets

From: Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds

  

Transcriptome

Genome

All Transcripts

Total number

34,784

23,594

Number with GO terms

18,845 (54%)

18,320 (78%)

GO terms per transcripta

7.1

7.9

Amount of GO terms

6091

6080

Overlapping GO terms

5584

All DEGs

(M+ + NM)

DEGs

1533

1876

Amount of GO terms

1901

2191

Overlapping GO terms

1663

NM-highb

DEGs

745

998

Amount of GO terms

1427

1673

Overlapping GO terms

1256

NM-lowc

DEGs

788

878

Amount of GO terms

1085

1185

Overlapping GO terms

880

  1. aAverage including only transcripts with at least 1 GO term
  2. bDEGs where transcript is more abundant in NM dry seed than M+ seed
  3. cDEGs where transcript is less abundant in NM dry seed than M+ seed