Table 2 Sequence quality and alignment information of 12 shell gland samples in two groups (G1 and G2)
Sample name | Total reads | Number of reads mapped to chicken genome | Percentage of reads mapped to chicken genome | Number of reads mapped to one feature | Percentage of reads mapped to one feature | Number of mapped reads not mapped to any feature | Percentage of total reads that mapped to the genome but not to any known features |
|---|---|---|---|---|---|---|---|
G1a | 23,419,963 | 18,942,266 | 80.88% | 12,137,770 | 51.83% | 5,855,006 | 25.00% |
G1b | 22,633,784 | 18,410,799 | 81.34% | 11,944,759 | 52.77% | 5,541,424 | 24.48% |
G1c | 22,478,580 | 18,055,302 | 80.32% | 11,646,051 | 51.81% | 5,503,560 | 24.48% |
G1d | 21,759,465 | 17,607,983 | 80.92% | 11,461,812 | 52.68% | 5,268,439 | 24.21% |
G1e | 22,657,131 | 18,480,220 | 81.56% | 12,031,069 | 53.10% | 5,536,020 | 24.43% |
G1f | 21,832,656 | 17,675,184 | 80.96% | 11,615,956 | 53.20% | 5,182,041 | 23.74% |
G2a | 21,033,600 | 17,095,487 | 81.28% | 11,393,823 | 54.17% | 4,839,852 | 23.01% |
G2b | 20,845,746 | 16,707,543 | 80.15% | 11,030,858 | 52.92% | 4,836,757 | 23.20% |
G2c | 20,784,865 | 16,624,745 | 79.98% | 11,034,132 | 53.09% | 4,745,972 | 22.83% |
G2d | 21,073,856 | 17,140,851 | 81.34% | 11,265,366 | 53.46% | 5,021,572 | 23.83% |
G2e | 21,309,212 | 17,398,557 | 81.65% | 11,516,521 | 54.04% | 5,014,414 | 23.53% |
G2f | 21,828,196 | 17,648,497 | 80.85% | 11,763,767 | 53.89% | 4,986,438 | 22.84% |