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Table 2 Thirty-six pervasive DE circRNAs with miRNA binding sites

From: Dynamic expression and functional analysis of circRNA in granulosa cells during follicular development in chicken

circRNA_id

Source type

Gene name

Length (nt)

TPM

Predict target miRNA (top 5)

SYF

F6

F1

chr1:13396552|13,400,906

exon

ORC5

302

5045.66

2279.65

693.55

miR-1620, miR-1620, miR-1596-5p, miR-1596-5p, miR-20b-3p

chr1:194886713|194,887,468

exon

DGAT2

296

1039.00

290.59

61.03

miR-301a-3p, miR-9-5p, miR-17-5p, miR-106-5p, miR-1641

chr1:195049093|195,055,350

exon

GDPD5

204

845.72

222.16

35.13

miR-17-5p, miR-20a-5p, miR-106-5p,miR-454-3p,miR-215-5p

chr1:48940651|48,958,288

intergenic

–

363

0.00

105.17

427.20

miR-1658-3p, miR-1655-5p,miR-1c,miR-15b-5p,miR-15a

chr1:88496631|88,501,288

intergenic

–

90

118.63

599.96

1195.79

miR-1631, miR-125b-5p,miR-1611,miR-489-3p,miR-1647

chr12:9000575|9,001,598

exon

NCKIPSD

313

203.69

681.61

1861.68

miR-22-5p, miR-1611,miR-183,miR-30c-1-3p,miR-1553-3p

chr14:8456629|8,458,456

exon

CLEC19A

390

83.63

1883.10

11,214.67

miR-1550-5p, miR-1594,miR-1635,miR-365-3p,miR-1564-3p

chr18:6458031|6,470,104

intergenic

–

417

62.49

641.68

1522.87

miR-1650, miR-1628, miR-20b-3p,miR-219a,miR-1617

chr2:142207897|142,211,314

exon

ST3GAL1

375

648.83

227.19

37.71

miR-20a-5p,miR-20b-5p,miR-1649-5p,miR-1553-3p,miR-17-5p

chr20:13650287|13,664,099

intergenic

–

277

79.77

404.72

1613.65

miR-217-5p,miR-20a-5p,miR-20b-5p,miR-9-5p,miR-1612

chr20:13663507|13,666,367

intergenic

–

413

319.73

1283.93

3535.73

miR-217-5p,miR-142-5p,miR-1646,miR-1612,miR-18a-3p

chr20:2426006|2,445,902

exon

TOX2

310

6239.09

3101.73

511.50

miR-1464,miR-1556,miR-1648-3p,miR-140-3p,miR-1614-3p

chr23:5084518|5,086,817

exon

PTP4A2

781

233.95

736.32

1591.60

miR-1b-5p,miR-1a-2-5p,miR-1a-1-5p,miR-1565,miR-1649-5p

chr26:4857446|4,864,529

exon

FOXP4

287

4771.82

1550.52

47.14

miR-1595-3p,miR-29b-2-5p,miR-1653,miR-460b-5p,miR-29b-1-5p

chr28:2871348|2,871,746

exon

R3HDM4

272

0.00

231.30

1373.32

miR-30c-1-3p,miR-1589,miR-181b-5p,miR-181a-5p,miR-1647

chr3:46294920|46,300,446

exon

UTRN

328

497.23

2583.92

5557.77

miR-1651-3p,miR-1453,miR-29b-1-5p,miR-1615,miR-138-1-3p

chr3:66378304|66,381,687

exon

SLC16A10

481

177.92

620.33

2035.17

miR-1562-5p,miR-215-3p,miR-1625-3p,miR-365-3p,miR-146b-3p

chr3:66399375|66,402,723

exon

SLC16A10

786

1447.98

3783.32

7746.36

miR-1585,miR-128-3p,miR-1574-3p,miR-455-3p,miR-124b

chr4:35377337|35,391,840

exon

FAM13A

194

0.00

168.06

687.86

miR-1632-5p,miR-29a-5p,miR-1b-3p,miR-1464,miR-100-3p

chr4:75040127|75,046,071

intergenic

–

363

2898.18

799.22

28.93

miR-1615,miR-1556,miR-456-3p,miR-142-5p,miR-1609

chr5:13061358|13,064,218

exon

–

447

62.81

320.24

4328.23

miR-148a-3p,miR-30a-3p,miR-30e-5p,miR-27b-3p,miR-33-5p

chr5:18049832|18,051,645

exon

–

206

2060.95

548.79

95.29

miR-205a,miR-205b,miR-1650,miR-456-3p,miR-19b-5p

chr5:25117899|25,119,650

intergenic

–

393

15,111.58

4700.60

1564.80

miR-302a,miR-146a-3p,miR-34a-5p,miR-34c-5p,miR-449a

chr5:49231273|49,273,628

intergenic

–

170

0.00

95.43

339.35

miR-1655-5p,miR-1616,miR-30e-3p,miR-1610,miR-1632-5p

chr5:49263265|49,291,813

intergenic

–

446

47.11

532.12

1259.60

miR-130a-5p,miR-1570,miR-204,miR-211,miR-1588

chr8:23979636|24,006,304

exon

FAF1

606

562.20

1731.65

3037.35

miR-183,miR-1552-3p,miR-26a-5p,miR-1649-5p,miR-302b-5p

chr8:25070718|25,078,153

exon

–

198

344.83

2395.12

4397.23

miR-757,miR-15b-5p,miR-15a,miR-16-5p,miR-1630

chr8:6369673|6,402,248

exon

RALGPS2

506

4434.04

1688.23

484.23

miR-16-2-3p,miR-137-3p,miR-1645,miR-1640,miR-217-5p

chr8:6369673|6,422,097

exon

RALGPS2

484

1513.50

546.63

103.36

miR-16-2-3p,miR-1645,miR-1625-3p,miR-18b-3p,miR-1560-3p

chr8:6384248|6,402,248

exon

RALGPS2

371

2084.74

728.96

262.57

miR-16-2-3p,miR-137-3p,miR-1640,miR-217-5p,miR-1658-5p

chr9:23223362|23,229,956

intergenic

–

811

2474.39

703.18

56.05

miR-130b-5p,miR-130b-5p,miR-106-3p,miR-106-3p,miR-17-3p

chr9:23669229|23,675,398

exon

MED12L

647

5842.60

2133.05

307.58

miR-15b-5p,miR-15a,miR-16-5p,miR-20b-5p,miR-7

Z:16684466|16,692,633

exon

CDC20B

540

1527.75

326.33

47.14

miR-1640,miR-1605,miR-215-3p,miR-1617,miR-1560-5p

Z:25372382|25,381,629

intron

–

292

1969.73

914.92

54.04

miR-9-5p,miR-1649-5p,miR-1571,miR-1592,miR-499-5p

Z:34511574|34,523,591

exon

PIP5K1B

359

1252.09

494.63

12,054.15

miR-125b-3p,miR-1564-3p,miR-1620,miR-181b-2-3p,miR-1574-5p

Z:63559688|63,569,326

exon

SSBP2

284

4447.64

1002.17

111.02

miR-301a-3p,miR-1550-3p,miR-130b-3p,miR-551-5p,miR-200a-5p

  1. Note: SYF: small yellow follicle, F6: smallest hierarchal follicle, F1: largest hierarchal follicle