Table 1 Algorithms for predicting miRNA target sequences
From: A mathematical model as a tool to identify microRNAs with highest impact on transcriptome changes
Method | Text scan for miRNA motif | Binding energy | Sequence conservation | RNA folding | Weight coefficient |
|---|---|---|---|---|---|
miRanda3.3a | Yes | Yes | No | Yes | 0.3 |
TargetScan | Yes | Yes | Yes | No | 0.3 |
RNAhybrid | Yes | Yes | No | Yes | 0.3 |
NucleoSeq | Yes | No | No | No | 0.1 |