Table 2 Execution time of the semi-global alignment in three situations of GATK HC
From: GPU accelerated sequence alignment with traceback for GATK HaplotypeCaller
| Situation | Number of alignments | Execution time |
|---|---|---|
| 1 | 3529 | 0.03% |
| 2 | 850376 | 14.58% |
| 3 | 54802 | 19.89% |
| Total | 908707 | 34.5% |
