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Table 4 Execution time of GATK HC implementations

From: GPU accelerated sequence alignment with traceback for GATK HaplotypeCaller

  Total time (s) Speedup
Baseline 8034.05 -
GPU (only pair-HMMs) 4687.08 1.71x
GPU (pair-HMMs + semi-global alignment with traceback) 3490.70 2.30x