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Table 4 Execution time of GATK HC implementations
From:
GPU accelerated sequence alignment with traceback for GATK HaplotypeCaller
Total time (s)
Speedup
Baseline
8034.05
-
GPU (only pair-HMMs)
4687.08
1.71x
GPU (pair-HMMs + semi-global alignment with traceback)
3490.70
2.30x
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