BMC Genomics

Table 1 Accuracy measurement of SuperRec, ShRec3D and HSA based on real Hi-C data using Spearman’s rank/Pearson’s coefficient between distances calculated from reconstructions and all-pair shortest-path distances computed from contact information

From: Large-scale 3D chromatin reconstruction from chromosomal contacts

Correlation	Method	Chromosome
		1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	X	All
Spearman	SuperRec	0.981	0.986	0.973	0.942	0.971	0.964	0.989	0.993	0.997	0.981	0.987	0.979	0.991	0.992	0.976	0.976	0.973	0.980	0.979	0.974	0.974	0.970	0.982	0.880
	ShRec3D	0.981	0.983	0.984	0.988	0.985	0.989	0.990	0.987	0.998	0.991	0.977	0.981	0.985	0.991	0.986	0.986	0.974	0.983	0.986	0.982	0.992	0.979	0.990	0.851
	HSA	0.799	0.916	0.916	0.740	0.857	0.884	0.866	0.952	0.904	0.904	0.892	0.801	0.733	0.891	0.880	0.873	0.759	0.808	0.747	0.841	0.934	0.828	0.892	-
Pearson	SuperRec	0.982	0.985	0.974	0.947	0.974	0.960	0.987	0.993	0.998	0.982	0.989	0.983	0.989	0.992	0.980	0.980	0.978	0.985	0.982	0.972	0.970	0.978	0.981	0.896
	ShRec3D	0.981	0.978	0.983	0.976	0.977	0.985	0.986	0.988	0.998	0.983	0.983	0.980	0.984	0.990	0.984	0.984	0.974	0.984	0.985	0.980	0.991	0.977	0.979	0.857
	HSA	0.820	0.915	0.904	0.719	0.812	0.831	0.835	0.935	0.909	0.897	0.879	0.813	0.757	0.893	0.851	0.890	0.790	0.813	0.752	0.786	0.914	0.763	0.836	-

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