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Table 2 Length K of product K-mers, time needed to encrypt K-mers and perform equality test to detect SNPs

From: A secure SNP panel scheme using homomorphically encrypted K-mers without SNP calling on the user side

N PDT K K-mer encryption (ms) equality test (sec)
10 0 10 45 82
10 1 13 56 141
10 2 17 92 300
10 3 20 101 418
10 4 24 119 603
  1. N indicates the number of SNP residues included in the panel. PDT is the mismatch tolerance, where higher PDT indicates lower false positive risks. The table shows how the changes in PDT and K affect the running time. The result indicates that larger K results in longer running time to encrypt and test equality