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Table 1 Computational performance on the simulated E. coli dataset

From: Improving the sensitivity of long read overlap detection using grouped short k-mer matches

 

GroupK

Minimap

Minimap2

DALIGNER

GraphMap

MHAP

Time (seconds)

1871

30

16

39

171

858

Memory (GB)

1.994

1.754

1.097

2.288

1.873

2.562

  1. The computational performance of overlap detection using GroupK, Minimap, Minimap2, DALIGNER, MHAP, and GraphMap on the simulated E. coli dataset
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BMC Genomics

ISSN: 1471-2164

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