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Table 4 Overlap detection on the ONT E. coli dataset

From: Improving the sensitivity of long read overlap detection using grouped short k-mer matches

 

GroupK

Minimap

Minimap2

DALIGNER

GraphMap

MHAP

F1 score

0.9383

0.9310

0.9090

0.8272

0.9280

0.8122

Sensitivity

0.9597

0.9546

0.9362

0.8730

0.8991

0.8871

Precision

0.9178

0.9085

0.8833

0.7860

0.9589

0.7490

  1. The performance of overlap detection using GroupK, Minimap, Minimap2, DALIGNER, MHAP, and GraphMap on the real ONT SQK-MAP-006 E. coli dataset. Minimap2 uses the ava-ont setup, which is optimized for ONT data
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BMC Genomics

ISSN: 1471-2164

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